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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACTGGGATGACTGGTTGAGACTTAAAGAGAATCATAAAGGACGACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATgtaagtttgctaattgtactcagaagattgaccttttatatcgctgagttatattctgtagaaccttcgcaggctatgaacctcataattagaagaatat...

Basic information

species Glycine max
transcript GLYMA04G00200.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00200.1 (Glycine max), 5'ss of exon 14
lower sequence: AT4G38240.2 (Arabidopsis thaliana), 5'ss of exon 14
TTACTGGGATGACTGGTTGAGACTTAAAGAGAATCATAAAGGACGACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATgtaagt--ttgctaattgtactcagaagattgaccttttatatcgctgagttat--attctgtagaaccttcgcaggctatgaacctcataattagaagaatat
|||||||||||| ||| ||||||| || || || |||||||| || || || || || || ||||| || |||||||| ||||||||||| ||||| |||    | | ||  ||  |   | ||     ||||| |   |||  ||    || ||||  ||    |  | | |  |   |  || | |          
TTACTGGGATGATTGGCTGAGACTAAAGGAAAACCATAAAGGCCGCCAATTCATTCGACCGGAAGTCTGTAGAACATACAATTTTGGTGAACATgttagtacccgattatgctatcctatatatcatagttttacaagtctgtttttgtaatgctgttaaattgacctatgtt-cgctgcatatgacttctgctt---

upper sequence: GLYMA04G00200.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv00s0585g00030.t01 (Vitis vinifera), 5'ss of exon 14
TTACTGGGATGACTGGTTGAGACTTAAAGAGAATCATAAAGGACGACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATgtaagtttgctaattgtactcagaagattgaccttttatatcgctgagttatatt-ctgtagaaccttcgcaggctatgaacctcataattagaagaatat--
                       | ||||||||||| ||||| || |||||||| || || |||||||||||||||||||||||||||||||||||| || |     |  |  |||| | | |   ||| | ||      |  | |    ||||| |   || ||   || ||    |||| ||   |    | |  
---------------------GTTAAAAGAGAATCACAAAGGTCGGCAGTTTATTCGTCCAGAAGTATGCAGAACATATAATTTTGGTGAGCATgtacgtgtatctgtc-tgatcagtataat--tcttgtttagaaaccaactgtgcagctgtaaatggtttgcctcctttgtgtatcattatgtcatatttgtgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400899|gb|BM177681.1|BM177681
EST:     GACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCAT                         GGTTCTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTG
genomic: GACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATgtaagtttgc ... atctttacagGGTTCTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTG
EST: gi|193578353|gb|FK537573.1|FK537573
EST:     ACATATAATTTTGGTGAGCAT                         GGTTCTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTG
genomic: ACATATAATTTTGGTGAGCATgtaagtttgc ... atctttacagGGTTCTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTG
EST: gi|10842801|gb|BF066219.1|BF066219
EST:     GACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGG-G----T                         --T-CTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTG
genomic: GACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATgtaagtttgc ... atctttacagGGTTCTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTG
EST: gi|208266208|gb|GE064543.1|GE064543
EST:     GACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCAT                         GGTTCTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTG
genomic: GACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATgtaagtttgc ... atctttacagGGTTCTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTG
EST: gi|6913097|gb|AW394627.1|AW394627
EST:     GACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCAT                         GGTTCTAGTNNGGGACAG
genomic: GACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATgtaagtttgc ... atctttacagGGTTCTAGTTTGGGACAG
EST: gi|207826963|gb|GD801138.1|GD801138
EST:     GACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCAT                         GGTTCTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTG
genomic: GACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATgtaagtttgc ... atctttacagGGTTCTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTG
EST: gi|14011124|gb|BG726055.1|BG726055
EST:     GACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGG-G----T                         --T-CTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTG
genomic: GACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATgtaagtttgc ... atctttacagGGTTCTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTG