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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGGGGCAGAAAGATTTCTCCTTTCCAGGTGTGCCATCTCTGTCAGAGGAAGACGATGAACTCACAGAGTCAAAAATTAAAGCTTTTTTGGATGAGAAGgtattgcttttagtttagttgaaattgagttagtccttctgctgtaacttcaccaatctttttgtccactaactgctgtgtcataatgatgattatgcatttatgacag

Basic information

species Glycine max
transcript GLYMA03G39760.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G39760.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G09000.1 (Arabidopsis thaliana), 5'ss of exon 14
TAAGGGGCAGAAAGATTTCTCCTTTCCAGGTGTGCCATCTCTGTCAGAGGAAGACGATGAACTCACAGAGTCAAAAATTAAAGCTTTTTTGGATGAGAAGgtattgcttttagtttagttgaaattgagttagtccttctgctgtaacttcaccaatctttttgtccactaactgctgtgtcataatgatgattatgcatttatgacag
 || | |   | |     |         |     || ||    |||||||| || ||||| || || |||||||||||||||||||| || |||||||||||    | |  |  |||      | |   ||| || || |       | ||||    | |||| | |   ||   ||    |||     ||| |||| |||| |  |||
GAAAGAGTCTACAATGAGCATGGAATGTGACCAACCTTCATACTCAGAGGATGATGATGAGCTGACCGAGTCAAAAATTAAAGCTTTCTTAGATGAGAAGgtccctcatgcacatta-----tactacattattcattgt-------cctcactg--cattttctacgtaaatcactaa--catggcagtgaatatgtatttgtctcag

upper sequence: GLYMA03G39760.1 (Glycine max), 5'ss of exon 14
lower sequence: EFJ32294 (Selaginella moellendorffii), 5'ss of exon 10
TAAGGGGCAGAAAGATTTCTCCTTTCCAGGTGTGCCATCTCTGTCAGAG-GAAGACGATGAACTCACAGAGTCAAAAATTAAAGCTTTTTTGGATGAGAAGgtattgcttttagtttagttgaaattgagttagtccttctgctgtaacttcaccaatctttttgtccactaactgctgtgtcataatgatgattatgcatttatgacag
 |   ||  | |  | |||| |    |  ||  | | |    | || |  || ||||||||  | |||||||||||||| |||||||||||||| | |||||||  ||     ||| | |  |  ||  |   |   |  ||  | |                                                               
-ACTTGGTCGCAGCAATTCTGCGGATCCAGTCGGTCCTTCGAGCCATACTGACGACGATGACGTTACAGAGTCAAAAATCAAAGCTTTTTTGGAGGCGAAGgtagagcaagaggttgattccatgttctgaaggctttcttggcgcag--------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335718|gb|CO979584.1|CO979584
EST:     AAGACGATGAACTCACAGAGTCAAAAATTAAAGCTTTTTTGGATGAGAAG                         GCTCTTGAACTGAAAAAATTGCAGACACCTTTATATGAAGAGTTTTACAAC
genomic: AAGACGATGAACTCACAGAGTCAAAAATTAAAGCTTTTTTGGATGAGAAGgtattgcttt ... tttatgacagGCTCTTGAACTGAAAAAATTGCAGACACCTTTATATGAAGAGTTTTACAAC