1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ACTTTCTCGGAAGCAAGTGGTCGTGGTTGGTGAAAGGACGTCTGAGGACTTTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACAgtaatcgcacttactctttatatacttgatatcttcaatttccttctgattgtcatcaataacatgttggctggtgttgatcgtag
species | Glycine max |
transcript | GLYMA03G36910.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACA GTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTAEST: gi|22929581|gb|BU546720.1|BU546720
genomic: TTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACAgtaatcgcac ... ttgatcgtagGTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTA
EST: TTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACA GTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTAEST: gi|31463893|gb|CD405921.1|CD405921
genomic: TTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACAgtaatcgcac ... ttgatcgtagGTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTA
EST: TTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACA GTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTAEST: gi|22928514|gb|BU545653.1|BU545653
genomic: TTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACAgtaatcgcac ... ttgatcgtagGTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTA
EST: TTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACA GTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTA
genomic: TTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACAgtaatcgcac ... ttgatcgtagGTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTTCTCGGAAGCAAGTGGTCGTGGTTGGTGAAAGGACGTCTGAGGACTTTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACAgtaatcgcacttactctttatatacttgatatcttcaatttccttctgattgtcatcaataacatgttggctggtgttgatcgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA