Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCATGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGATCGACTTCCATCAGCTTCAACCTGCTACAATACTCTTAAGgtactactaatatagtaatagggaagacggaagacatccttatgttacttgtgagttatatgacatattgaactttagaatcttgaaattttcataatcc...
Basic information
species | Glycine max |
transcript | GLYMA03G34650.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G34650.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os03g47949.1 (Oryza sativa), 5'ss of exon 9
GTTGCATGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGATCGACTTCCATCAGCTTCAACCTGCTACAATACTCTTAAGgtactactaatatag----taatagggaagacggaagacatccttatgttacttgtgagttatatgacatattgaactttagaatcttgaaattttcataatcc-------------------------------------------------
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GTTCCATGTGATGTTACACTTTGGGCTACAATTGGAGGCCAGGACGTGGATCGTCTTCCATCTGCTTCCACGTGCTATAACACACTCAAGgtaaaaactatattgcttttatctatgcaccctgctaatatgataatttttattacatgtttctcatcgcat--gttcctaatttcttataggcatcgatgccaaattgctgcattttatttgacctgttctgttcattttattactttccag
upper sequence: GLYMA03G34650.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G461948_T01 (Zea mays), 5'ss of exon 13
GTTGCATGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGATCGACTTCCATCAGCTTCAACCTGCTACAATACTCTTAAGgtactactaatatagtaatagggaagacggaagacatcctta-tgttacttgtgagttata-tgacatattgaactttagaatcttgaaattttcataatcc
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GTTCCATGTGATGTAACACTTTGGGCATCAATTGGAGGCCAAGATGTAGATCGTCTTCCATCTGCTTCCACATGCTACAATACGCTCAAGgtataaccg-tatagcact------gaccagtgacattcatactgtcgtttatgctctcttctaaccttttctaatcct---ttctgttaccttcag-----
upper sequence: GLYMA03G34650.1 (Glycine max), 5'ss of exon 14
lower sequence: AT3G53090.1 (Arabidopsis thaliana), 5'ss of exon 13
GTTGCATGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGATCGACTTCCATCAGCTTCAACCTGCTACAATACTCTTAAGgtactactaatatagtaatagggaagacggaagacatccttatgttacttgtgagttatatgacatattgaactttagaatcttgaaattttcataatcc
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GTCTCTTGTGATACCTCTCTTTGGGCTGCTATTGGAGGACAAGATGTAGAAAGACTTCCATCTGCTTCTACGTGCTACAATACTCTTAAGgtgaagtttcaatagtc-caattatctttgtag---tctacatgtgaatattcctatatcttttttgttcagtctttctttttggatttcttcag-----
upper sequence: GLYMA03G34650.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv08s0007g04290.t01 (Vitis vinifera), 5'ss of exon 13
GTTGCATGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGATCGACTTCCATCAGCTTCAACCTGCTACAATACTCTTAAGgtac----------------tactaat----atagtaatagggaagacggaagacatccttatgttacttgtgag-ttatatgacatattgaactttagaatcttgaa--attttcataatcc-------------------------------------
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GTTGCATGCGATGTGCCTCTTTGGGCAACAATTGGGGGACAGGATGTAGAGCGACTTCCCTCAGCTTCCACATGCTACAACACGCTCAAGgtacatctccttgtctacttcatcaatttttatagcaaggcacagagcttggaacatcca-attcaacctattagaccatactgtaatcttatatctaccatctttacttatgtgcatgttttttttttttttttaacttttttgttttaatggttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51344285|gb|CO985018.1|CO985018EST: AAGATGTAGATCGACTTCCATCAGCTTCAACCTGCTACAATACTCTTAAG CTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCC
genomic: AAGATGTAGATCGACTTCCATCAGCTTCAACCTGCTACAATACTCTTAAGgtactactaa ... ctgattacagCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCATGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGATCGACTTCCATCAGCTTCAACCTGCTACAATACTCTTAAGgtactactaatatagtaatagggaagacggaagacatccttatgttacttgtgagttatatgacatattgaactttagaatcttgaaattttcataatcc
- - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT