Sequence
atgc intronic sequence ATGC exonic sequenceCTTCGAGAATCAAAGGGAATGACGACAATCAAATTCCGTCCACATTCTGGAGAGgtatatacttgaatatattttctgtccatttgttaactgttttgaggagactgatcactgatgcatcatattgactttag
Basic information
species | Glycine max |
transcript | GLYMA03G07460.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G07460.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os05g28180.3 (Oryza sativa), 5'ss of exon 6
CTTCGAGAATCAAAGGGAATGACGACAATCAAATTCCGTCCACATTCTGGAGAGgtatatacttgaatatatttt-ctgtccatttgttaac-tgttttgaggagactgatcactgatgcatcatattgactttag
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TTGCGTGAATCAAAAGGGATGACCACAATCAAATTCCGTCCACATGCTGGCGAGgtagaatctcttcaatgttccactgtctttctgttattgtgtttgtctataactgtatggtgtcacag--------------
upper sequence: GLYMA03G07460.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G416667_T01 (Zea mays), 5'ss of exon 14
CTTCGAGAATCAAAGGGAATGACGACAATCAAATTCCGTCCACATTCTGGAGAGgtatatacttgaatatattttctgtccatttgttaactgttttgaggagactgatcactgatgcatcatattgactttag
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CTGCGTGAGTCAAAGGGAATGACCACTATCAAATTCCGTCCACATGCTGGAGAGgtaaa-atctattccaggttcctctctgaaagtacagtatcctgtttgcactaatggtt-atgc-tcgtacag-------
upper sequence: GLYMA03G07460.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 14
CTTCGAGAATCAAAGGGAATGACGACAATCAAATTCCGTCCACATTCTGGAGAGgtatat-acttgaatatattttctgtccatttgttaactgttttgaggagactgatcactgatgcatcatattgactttag
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CTACGAGAGTCAAAGGGCATGACTACTATCAAATTCCGTCCACATTCTGGGGAGgtatgttatgtgaagaagttgatcaact-ttggttcatttattagattgtacagatacctcatatcccctact---ttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9565697|gb|BE475206.1|BE475206EST: GAGAATCAAAGGGAATGACGACAATCAAATTCCGTCCACATTCTGGAGAG GGCTG-TGATATTGACCACCTTGCAGCAACCTTCCTCACNGCTCACAACAT
genomic: GAGAATCAAAGGGAATGACGACAATCAAATTCCGTCCACATTCTGGAGAGgtatatactt ... ttgactttagG-CTGGTGATATTGACCACCTTGCAGCAACCTTCCTCACGGCTCACAACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCGAGAATCAAAGGGAATGACGACAATCAAATTCCGTCCACATTCTGGAGAGgtatatacttgaatatattttctgtccatttgttaactgttttgaggagactgatcactgatgcatcatattgactttag
- - - - - - - - - - - - - - - - - - - - - - - TGGAGA