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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAGATATTAAAGgtatttttctggagttattatttatgtataacatgttacatacttagaagttagaatgtcattttcttcctagacaaaggtgagccagccttaaattttc...

Basic information

species Glycine max
transcript GLYMA03G03120.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os02g51430.2 (Oryza sativa), 5'ss of exon 12
ATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAGATATTAAAGgtattt---ttctggagttattatttatgtataacatgttacatacttagaagttagaatgtcattttctt---cctagacaaaggtgagccagccttaaattttc----------------------------------------------------------------
 |||||||| |||||||| ||||| ||||| ||||| || |||||||||||| | || || || || || |||||  |  |||| ||  | ||  | ||||||| |   |||    |  ||  |||   | |   |  ||   |    | ||| |  ||||| |    |     | | | ||    |  |    |||| | |  |                                                                 
TTTCCAGCTCATGGTAAACCTGTATACTGAAAGGTTCATCCAGATGCTAAGACTTCTCAGTGATAGAGCAAATGATATTCCAAATATAAATATTCTTAAGgtatatgaattcaaatgccatcgttttattctgctaaatttactttccacaagatgaaatgtgaaaaccgcaagcattgtcagcattttgttttccttgattcatgaatatcacttgtttggtttgctttctcgtatattgcaaaatcattaaatgaatggtcactgtag

upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G070045_T01 (Zea mays), 5'ss of exon 8
ATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAGATATTAAAGgtatttttctggagttattatttatgtataacatgttacatacttagaagttagaatgtcattttcttcctagacaaaggtgagccagccttaaattttc------------------------------------
 |||||||| |||||||| ||||| |||||||| || |||||||||||  || | || || || || || || ||  |   ||| ||  | ||  | ||||||  ||     |  ||| ||   | |||  |    | ||   ||  |  ||    |  | ||   |||      || |   |   |   || | || |                                     
TTTCCAGCTCATGGTAAACCTGTATACTGAGAGATTCATTCAGATGCTTCGACTTCTCAGTGATAGAGCAAACGATATTCAAAATATAAATATCCTGAAGgtaccttatctcaaatatcataattttatt-ctcactgcaccttttcagattgtgct--ccttcggttcaggagtaatgagtaaatattttttacttctgttcttagcaagctcattaatagactaatcactgtag

upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G579509_T01 (Zea mays), 5'ss of exon 3
ATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAGATATTAAAGgtatttttctggagttattatttatgtataacatgttacatacttagaagttagaatgtcattttcttcctagacaaaggtgagc-cagccttaaattttc-
 |||||||| |||||||| || ||||||||||| || |||||||||||  || | || || || || || || ||  |   ||| ||  | || || ||||||  ||     |  ||| ||   | |||  |     |||   ||  |  ||    | || |    |  | ||  |||    | | |  | || |   ||  
TTTCCAGCTCATGGTAAACCTATACACTGAGAGATTCATTCAGATGCTTCGACTTCTCAGTGATAGAGCAAACGATATTCAAAATATAAACATCTTGAAGgtaccttatctcaaatatcataattttatt-ctcaccacaccttttcagattgtgct-tcttggattcacgaggtaaaaaaaaactcgacatttagggttaa

upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 13
ATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAGATATTAAAGgtatttttctggagttattatttatgtataacatgttacatacttagaagttagaatgtcattttcttcctagacaaagg--tgagccagccttaaattttc-
|||||| || ||||||||||| || ||||||||||| ||||||||||| ||  |||| || ||| | || ||| || | ||||| || ||||| |||||||||||  | | |   |  | ||| | |||    |   | ||| |||  | | | | ||  ||| ||    ||    | |   | ||  |   | ||  | |  
ATTCCAACTGATGGTAAATCTTTATACTGAGAGGTTCATTCAGATGCTCAGGCTGCTCAGTGACCGAGCAAATCAACTGACAAATATAGAGATTTTAAAGgtattccttttg---ttctgtttttttatttattcaaatatatttattattaatagtgatattgtcaaattaactgatgaatttagagattttgaaggtattt

upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 5'ss of exon 13
ATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCAGATGCTAAGATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAGATATTAAAGgtatttttctggagttattatttatgtataacatgttacatacttagaagttagaatgtcattttcttcctagacaaaggtgagccagccttaaattttc---
|||||| || ||||||||||| || ||||||||||| ||||||||||| ||  |||| || ||| | || ||| || | ||||| || ||||| || ||||||||||| |  | ||||  |||   | ||   ||||    |  ||    |    || | || || |     || |  | | |         |  |  ||   
ATTCCAACTCATGGTAAATCTTTATACTGAGAGGTTCATTCAGATGCTTAGGCTGCTCAGTGACCGAGCAAATCAACTGACAAATATAGAGATTTTGAAGgtattttt-tctatttatctttttgctctagtttgttttg-atgtatgtatatatatat-atattttatagggatattgttaatattatggcatttgatcaca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15664484|gb|BI701855.1|BI701855
EST:     GATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAGATATTAAAG                         GTAACTGGATGGGTGGTTGAATACCAAGATAATCTGATTGGGCTTGGAGTC
genomic: GATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAGATATTAAAGgtatttttct ... tatgaagcagGTAACTGGATGGGTGGTTGAATACCAAGATAATCTGATTGGGCTTGGAGTC