Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCGCAGgtgtgagagaaacctctgcagtttatattatataatttttttagttgaacctgaaccatttctttgtagctccccttattctctgtctccttgttatatctgttgacaatgtctgctgacagttaccattttcattttgatttgcag

Basic information

species Glycine max
transcript GLYMA02G42560.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 14
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 14
GTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCGCAGgt--gtgagagaaacctctgcagtttatattata-taattttt--------ttagttgaac----------------ctgaaccatttctttgtagctccccttattc-----tctgtctccttgttatatctgttgacaa--tgtctgctgacagt-----tacca------ttttcattttgatttgcag
||||||||||||||||| ||||| || ||||||||||| || ||||| |||||||| |||||  ||| |    ||   ||    ||  |  ||| |||  | |        ||   ||||                 ||| |  | || |   |       ||| ||      | || |    ||||||||    |||  |    | | |  || ||     || ||      |||| ||||| ||||||||
GTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAGgttagtgtggtgcactcttgatacttgcaacatactaaactatgaaaggactttactgaatatatgtggcgtaagcactggaagagttatgaatcaactaacttgttgaataatttgacctgatgttatatagaatgaagaatctttttcccaccgtattaatatcaatagtcttttaatttttatttgcag

upper sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 14
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 14
GTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCGCAGgtgtgagagaaacctctgcagtttatattatataatttttttagttgaacctgaaccatttctttgtagctccccttattctctgtctccttgttatatctgttgacaatgtctgctgacagttaccattttcattttgatttgcag
||||||||||||||||| ||| | || ||||||||||| || ||||| || ||||| |||||  |   |    ||   |  || ||| | |  ||  | || |  ||     | ||   ||   |  |      ||| |||  |      |    | |   ||    ||| |                                   
GTTGGGTACACACCTGATTACATGTTTCTTCTGCAAACGATACTCCGTACGGATCCTCAGgttagtttg----ctgcacttttgatactttgcaacatattaaactgtggaaggactggtttactaga----ttcttgttccgtaa----tcacaagaagagtcataaattt-----------------------------------