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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAGgtaatatttgaaatatcatgcttctttttatttaatgaaaaaaaaaatcccgggaaataaaataaaaaagatgtttcactcaattctctactttgtagcg...

Basic information

species Glycine max
transcript GLYMA02G41850.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31458680|gb|CD400708.1|CD400708
EST:     GTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAG                         TGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
genomic: GTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAGgtaatatttg ... gtattggcagTGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
EST: gi|6070488|gb|AW099875.1|AW099875
EST:     GTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAG                         TGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCA
genomic: GTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAGgtaatatttg ... gtattggcagTGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCA
EST: gi|254315842|gb|GR825651.1|GR825651
EST:     GTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAG                         TGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
genomic: GTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAGgtaatatttg ... gtattggcagTGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
EST: gi|192322275|gb|FK014516.1|FK014516
EST:     GTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAG                         TGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAGGATT
genomic: GTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAGgtaatatttg ... gtattggcagTGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
EST: gi|193309058|gb|FK275782.1|FK275782
EST:     AAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAG                         TGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
genomic: AAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAGgtaatatttg ... gtattggcagTGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
EST: gi|254315128|gb|GR830121.1|GR830121
EST:     GTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAG                         TGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
genomic: GTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAGgtaatatttg ... gtattggcagTGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
EST: gi|6848973|gb|AW351263.1|AW351263
EST:     GCCAAGTAGACAG                         TGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
genomic: GCCAAGTAGACAGgtaatatttg ... gtattggcagTGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
EST: gi|193382835|gb|FK347712.1|FK347712
EST:     AAGATAAAGAAGTTGTCTAATGTGTTTCTACGCCAAGTAGACAG                         TGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
genomic: AAGATAAAGAAGTTG-CTAATGTGTTTCTACGCCAAGTAGACAGgtaatatttg ... gtattggcagTGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
EST: gi|254315841|gb|GR825650.1|GR825650
EST:     GTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAG                         TGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
genomic: GTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAGgtaatatttg ... gtattggcagTGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
EST: gi|14992061|gb|BI317734.1|BI317734
EST:     GTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAG                         TGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
genomic: GTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAGgtaatatttg ... gtattggcagTGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
EST: gi|4395663|gb|AI494660.1|AI494660
EST:     GCCAAGTAGACAG                         TGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT
genomic: GCCAAGTAGACAGgtaatatttg ... gtattggcagTGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAGgtaatatttgaaatatcatgcttctttttatttaatgaaaaaaaaaatcccgggaaataaaataaaaaagatgtttcactcaattctctactttgtagcg

- - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaaa