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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCAGAACATCAAACTTCAAGTTACCAGCTGATCATTCCGTTGCTATTATTATGGTTGGTCCTGGTACAGGCTTGGCACCTTTCAGGGGATTTTTACAGgtacgttaacattttacagatgttttgtagtttttaaatatttatgaaaatcaggttgctagcttttgcataatattaaatgaagagggaaaattttggg...

Basic information

species Glycine max
transcript GLYMA02G37850.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G37850.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 14
TATCAGAACATCAAACTTCAAGTTACCAGCTGATCATTCCGTTGCTATTATTATGGTTGGTCCTGGTACAGGCTTGGCACCTTTCAGGGGATTTTTACAGgtacgttaacattttacagat-gttttgtagtttttaaatatttatgaaaat-caggttgctagct--tttgcataatattaaatgaagagggaaaattttggg
||| ||  ||||||| ||||| ||||| | ||||| ||    | | ||||| ||||| || |||||||| ||||||||||||||||| |||||| |||||||     |    |||     | ||   ||  | ||   |||     | ||||  |   ||  || |  ||||   |                            
TATTAGGCCATCAAATTTCAAATTACCTGTTGATCCTTTGACTCCAATTATCATGGTGGGACCTGGTACTGGCTTGGCACCTTTCAGAGGATTTCTACAGgttttggattgctttctgatttgtgaggttatcttagcataagagagtaaatataaaatgagagttactttgtccag---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254337946|gb|GR845409.1|GR845409
EST:     TTATGGTTGGTCCTGGTACAGGCTTGGCACCTTTCAGGGGATTTTTACAG                         GAAAGATTGGTCCTCAAAGAGGATGGCGTTCAACTTGGTCCTGCATTACTC
genomic: TTATGGTTGGTCCTGGTACAGGCTTGGCACCTTTCAGGGGATTTTTACAGgtacgttaac ... atttacccagGAAAGATTGGTCCTCAAAGAGGATGGCGTTCAACTTGGTCCTGCATTACTC
EST: gi|208187882|gb|GD980956.1|GD980956
EST:     TTATGGTTGGTCCTGGTACAGGCTTGGCACCTTTCAGGGGATTTTTACAG                         GAA-GATTG-TC-TCAA-GAGGA
genomic: TTATGGTTGGTCCTGGTACAGGCTTGGCACCTTTCAGGGGATTTTTACAGgtacgttaac ... atttacccagGAAAGATTGGTCCTCAAAGAGGA