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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCAGTTATTCAATTACCATCACAGACGTTGCTACTATCTGTTTCTGACAAAGCCTTCCGCTTGATTGGGATGCTTTTTCCTGGGgtaacatttagttgctttttgaggttctattataattatggatcaattataccttgcctatttatttactcgaagccttgaatgctagcag

Basic information

species Glycine max
transcript GLYMA02G10880.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10880.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G25540.2 (Arabidopsis thaliana), 5'ss of exon 13
TGTGCAGTTATTCAATTACCATCACAGACGTTGCTACTATCTGTTTCTGACAAAGCCTTCCGCTTGATTGGGATGCTTTTTCCTGGGgtaacatttagttgctttttgaggttctattataattatggatca-attat--accttgcctatttatttactcgaagccttgaatgctagcag
|||||||| || || || |||||||||||| | || || ||||| |||||||| || | |||||||||||| |||||||| || |||||||        |   |||   |  |||||     || ||  ||| ||||   ||  |      || |||  |  |  ||| |           
TGTGCAGTCATCCAGTTGCCATCACAGACGCTTCTTCTCTCTGTCTCTGACAAGGCTTGCCGCTTGATTGGAATGCTTTTCCCAGGGgtaaggaagtactaagtttaaggtgtctatatatgttttgcttcacattagtgactcttgagggttgttttgtttactcctag-----------

upper sequence: GLYMA02G10880.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv01s0011g03160.t01 (Vitis vinifera), 5'ss of exon 13
TGTGCAGTTATTCAATTACCATCACAGACGTTGCTACTATCTGTTTCTGACAAAGCCTTCCGCTTGATTGGGATGCTTTTTCCTGGGgtaacatttagttgctttttgaggttctattataattatggat--caattataccttgcctatttatttactcgaagccttgaatgctagcag---------
|||||||| || || |||||||| ||||| ||||| || ||||||||||||||||||| ||| ||||| || ||||||||||||||||| | |||   |       | ||    | ||  |   |  ||    || || |   |     |||    ||  |     || | ||  | | |         
TGTGCAGTCATCCAGTTACCATCTCAGACATTGCTGCTCTCTGTTTCTGACAAAGCCTGCCGTTTGATAGGAATGCTTTTTCCTGGGgtgagattc--tcatcaacttagtccatcttgaacccaatgaaaataagtacagtataggattttgcaaacctggcttttttattgaaaactgaaaaaggaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208316796|gb|GE115396.1|GE115396
EST:     TATCTGTTTCTGACAAAGCCTTCCGCTTGATTGGGATGCTTCTTCCTGGG                         GATATGGTTGTATTTAAGCCGCAATTGTCGAGTCAGCAGCAGCAACAAATG
genomic: TATCTGTTTCTGACAAAGCCTTCCGCTTGATTGGGATGCTTTTTCCTGGGgtaacattta ... atgctagcagGATATGGTTGTATTTAAGCCGCAATTGTCGAGTCAGCAGCAGCAACAAATG
EST: gi|6915619|gb|AW397149.1|AW397149
EST:     TATCTGTTTCTGACAAAGCCTTCCGCTTGATTGNGATGCTTTTTCCTGGG                         GATATGGTTGTAT
genomic: TATCTGTTTCTGACAAAGCCTTCCGCTTGATTGGGATGCTTTTTCCTGGGgtaacattta ... atgctagcagGATATGGTTGTAT