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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTAAACAGTACCCTGAAGCATATACATATAATGGAATTGTAATCGTTCGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAGgtaatgagaaatgagttgtaattgacatttttccaatcaagagcctgccttaattcatttagagttctcttatcag

Basic information

species Glycine max
transcript GLYMA02G10590.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10590.1 (Glycine max), 5'ss of exon 14
lower sequence: AT3G12520.2 (Arabidopsis thaliana), 5'ss of exon 15
ATGTTAAACAGTACCCTGAAGCATATACATATAATGGAATTGTAATCGTTCGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAGgtaa---tgagaaatgagttgtaattgacatttttcca--atcaagagcctgccttaattcatttagagttctcttatcag------
|  | |||||||| || || ||||| || || || || ||||| || |||||  | |||||||| ||||||||||| |||| ||| ||||| |||||||||| |   ||| |  ||  |  | | |  | || |   |  ||| | |    |  | ||  ||   | |      ||   |       
ACATGAAACAGTATCCAGAGGCATACACTTACAACGGGATTGTGATTGTTCGAATCGATGCTCCCATTTATTTTGCCAACATAAGCTACATCAAGGACAGgtgaaattgacatttggttcctgacttgctttctgttatgatccacataaagaatcaacacaacaacaccatgtttcgaaattgcag

upper sequence: GLYMA02G10590.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 5'ss of exon 14
ATGTTAAACAGTACCCTGAAGCATATACATATAATGGAATTGTAATCGTTCGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAGgtaatgagaaatgagttgtaat-tgacatttttccaatcaa--gagcctgccttaattcatt-tagagttctcttatcag-----------------------------------------------------------------
|  || | || || || ||||||||||||||  |||| ||||| || |||||  ||||||| || |||||||||||||| | |||| ||||||| || |||| |  |||  ||  |  | |  |  |  |||||||  ||   ||   |  |||| | || | ||   || |  ||  |                                                                  
ACATTCAGCAATATCCAGAAGCATATACATACCATGGGATTGTGATTGTTCGGATTGATGCACCCATTTATTTTGCAAATATAAGTCACATAAAAGAAAGgtgaaaagatgtgcttccttacattgctattttccaggcacctgatgttttcttattgcactgtatgatttttctaatatcggttatagttcataattccctaattaaaaaataacttttaaattattgagctgttctctgccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254323183|gb|GR835791.1|GR835791
EST:     CGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAG                         GTTGCGTGAATACGAAGTTGATGTTGATTGTTCTAAAAGACATGGACCTGA
genomic: CGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAGgtaatgagaa ... ctcttatcagGTTGCGTGAATACGAAGTTGATGTTGATTGTTCTAAAAGACATGGACCTGA
EST: gi|22524497|gb|BU083308.1|BU083308
EST:     CGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAG                         GTTGCGTGAATACGAAGTTGATGTTGATTGTTCTAAAAGACATGGACCTGA
genomic: CGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAGgtaatgagaa ... ctcttatcagGTTGCGTGAATACGAAGTTGATGTTGATTGTTCTAAAAGACATGGACCTGA
EST: gi|254323182|gb|GR835790.1|GR835790
EST:     CGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAG                         GTTGCGTGAATACGAAGTTGATGTTGATTGTTCTAAAAGACATGGACCTGA
genomic: CGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAGgtaatgagaa ... ctcttatcagGTTGCGTGAATACGAAGTTGATGTTGATTGTTCTAAAAGACATGGACCTGA
EST: gi|254320749|gb|GR827198.1|GR827198
EST:     CGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAG                         GTTGCGTGAATACGAAGTTGATGTTGATTGTTCTAAAAGACATGGACCTGA
genomic: CGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAGgtaatgagaa ... ctcttatcagGTTGCGTGAATACGAAGTTGATGTTGATTGTTCTAAAAGACATGGACCTGA
EST: gi|51335397|gb|CO979263.1|CO979263
EST:     CGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAG                         GTTGCGTGAATACGAAGTTGATGTTGATTGTTCTAAAAGACATGGACCTGA
genomic: CGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAGgtaatgagaa ... ctcttatcagGTTGCGTGAATACGAAGTTGATGTTGATTGTTCTAAAAGACATGGACCTGA