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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGAAGGCCACCCTTTGTGTCCATCCTGACAAGTTACAGCAACGCGGAGCGAGTATTCAAAACAAATACATATGTGAGAAGGTCTTTGATCTCCTAAAGgtatgtcatgcatgccatctttcagttgatttattttgaaccatctgcaaaggaggatttgtcagagcaaaccataataatgttgcataactaaaatcta...

Basic information

species Glycine max
transcript GLYMA02G06160.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06160.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os05g50370.1 (Oryza sativa), 5'ss of exon 7
TAGGAAGGCCACCCTTTGTGTCCATCCTGACAAGTTACAGCAACGCGGAGCGAGTATTCAAAACAAATACATATGTGAGAAGGTCTTTGATCTCCTAAAGgtatgtc--atgcatgccatctttcagttgatttattttgaa--ccatctgcaaaggagga-tttgtcagagcaaaccataataatgtt-gcataactaaaatcta
 |||||||| ||||||||||||||||| || || ||||||||| | || || |  ||   | | ||||||||||| |||||||| |||||||| || ||||| |||   |||  | | |  |||    ||||| |||| |||   ||| | |  | | |   |||  ||   |  |    | || |    ||||   |  |     
CAGGAAGGCAACCCTTTGTGTCCATCCAGATAAATTACAGCAAAGGGGTGCTACAATCAGACAGAAATACATATGCGAGAAGGTTTTTGATCTTCTTAAGgtttgtgcaatgtctacaaaatttgttatgatt-atttggaagttcattttctcatgtgtccttttccatttctgattgcattagtacaagcatgtttgca-----

upper sequence: GLYMA02G06160.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G438895_T01 (Zea mays), 5'ss of exon 9
TAGGAAGGCCACCCTTTGTGTCCATCCTGACAAGTTACAGCAACGCGGAGCGAGTATTCAAAACAAATACATATGTGAGAAGGTCTTTGATCTCCTAAAGgtatgtcatgcatgccatctttcagttgatttattttgaaccatctgcaaaggaggatttgtcagagcaaaccataataatgttgcataactaaaatcta
 |||||||| ||||| ||||||||||| || ||  |||||||  | || || |  ||   | | |||||||||||||||||||| |||||||| || |||||||||       ||  | |     |||| |  | | |    || ||  |||  |||| | |     |   |    |   ||||    |           
CAGGAAGGCAACCCTATGTGTCCATCCAGATAAACTACAGCAGAGGGGCGCTACGATCAGACAGAAATACATATGTGAGAAGGTTTTTGATCTTCTTAAGgtatgt-------gctctgtccacattgaatgctctgg--ttatttg-gaagttggatctctgctcacctgctgccacc-tgttttgcag----------

upper sequence: GLYMA02G06160.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 7
TAGGAAGGCCACCCTTTGTGTCCATCCTGACAAGTTACAGCAACGCGGAGCGAGTATTCAAAACAAATACATATGTGAGAAGGTCTTTGATCTCCTAAAGgtatgtcat--gcatgccat---ctttcagttgatttattttgaaccatctgcaaaggaggatttgtcagagcaaaccataataatgt-tgcataactaaaatcta
||| || ||||| |||||||| ||||||||||| ||||| ||| | || || || |||||| | || ||||||||||| ||||| |||||||| |||||||| |||||   |  ||||||   |||||     ||| ||||   |  |  ||   |  |     |  ||    ||||  |    |||  |  |   ||  || |  
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcaccagtctgccattttctttcccaaaattgatttctgattaaatgtctaata----cttacacttaaaactgtttccatgcctataggcctctaaac--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14126327|gb|BG790765.1|BG790765
EST:     CGAGTATTCAAAACAAATACATATGTGAGAAGGTCTTTGATCTCCTAAAG                         GAAGCTTGGAACAAATTCAACTCACAAGAGCGA
genomic: CGAGTATTCAAAACAAATACATATGTGAGAAGGTCTTTGATCTCCTAAAGgtatgtcatg ... caatatccagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGA