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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGGCTGGAAAGGTTCCAGATGTTTACTACTGCCTCAAGCTTTTGGAAGCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaacttatacatttattctcatgtttatccccttttcttttcctttctttagagtgattccacatgcctattcctatggttttcatgcaatgagaa...

Basic information

species Glycine max
transcript GLYMA02G04320.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G04320.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 5'ss of exon 11
AACAGGCTGGAAAGGTTCCAGATGTTTACTACTGCCTCAAGCTTTTGGAAGCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaacttatacatttattctcatgtttatccccttttcttttcctttctttagagtgattccacatgcctattcctatggttttcatgcaatgagaa--
||  |||||| || |   | ||||||| |||||||||||||||| | ||||| ||||| |||||||||||||| || ||||| || || || |||||||||||     ||   | |  ||   ||| | ||||  |     |||      | | ||||   |  ||  |    ||  ||  ||  | | || | | |     
AAAGGGCTGGCAAAGCGGCCGATGTTTTCTACTGCCTCAAGCTTCTTGAAGCAACTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAGGgtaggtgtttcc-cttacatatacatatgtatcttcaaag-tttcataaacatcagagatctctcaactagacatgactcaggagtacctgaatttatcctt

upper sequence: GLYMA02G04320.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM5G840582_T03 (Zea mays), 5'ss of exon 12
AACAGGCTGGAAAGGTTCCAGATGTTTACTACTGCCTCAAGCTTTTGGAAGCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaacttatacatttattctcatgt-ttatcccctttt-cttttcctttctttagagtgattccacatgcctattcctatggttttcatgcaatgagaa
|    || || || |   |||| |||| |||||||||||||||  |||| || || || || ||||||||||| || || || ||||| ||||| ||||||||      ||||   | ||  | |||  |||||      | ||         |||  ||||||       |  ||||  ||||  |   |  ||       
AGAGAGCCGGCAAAGCAGCAGACGTTTTCTACTGCCTCAAGCTCCTGGAGGCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGGgtatgtgtatatatgatgatgataatgagttatctgtgagtgctggatgaagttttgaagtgat-----gggtttatt--tatgaatga-acacag------

upper sequence: GLYMA02G04320.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G23310.2 (Arabidopsis thaliana), 5'ss of exon 13
AACAGGCTGGAAAGGTTCCAGATGTTTACTACTGCCTCAAGCTTTTGGAAGCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaacttatacatttattctcatgtttatccccttttcttttcctttctttagagtgattccacatgcctattcctatggt---tttcatgcaatgagaa------------
|||| |||||||| || ||||| |||| |||||| |||||||| || |||||||| || || ||||| || ||||| || |||||||| |||||||||||||| | | |  | |   || | |    ||  | | | | |  | || | | | |  | | ||||||| ||   |||   |  ||   || |||   | || ||            
AACAAGCTGGAAAAGTGCCAGACGTTTTCTACTGTCTCAAGCTCTTAGAAGCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc-tgctactactgtttctttcttgctcatctgatctcttct-tatgaactcattccacttgtggattttgacagtgtgttccatctgaggacaacaatcctgccag

upper sequence: GLYMA02G04320.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G70580.2 (Arabidopsis thaliana), 5'ss of exon 12
AACAGGCTGGAAAGGTTCCAGATGTTTACTACTGCCTCAAGCTTTTGGAAGCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaacttatacatttattctcatgtttatccccttttcttttcctttctttagagtgattccacatgcctattcctatggttttcatgcaatgagaa
|||| || ||||| || || || |||| ||||||||| ||||| || |||||||| || || ||||| ||||| || || |||||||| || ||||||||||| |||     | |   |  ||| ||| | |  |  |||| | |  ||   ||  ||  |   ||  |   | |  || |   |||||           
AACAAGCCGGAAAAGTCCCTGACGTTTTCTACTGCCTTAAGCTCTTAGAAGCCACAGGAATCTCCACAGTTCCAGGCTCTGGATTTGGACAAAAAGAAGGgtagaaa-----aaa---accctc-tgtgttttacagtttcatgttattc--ttgcagcaagctcatttttgtttgtctgtttgtttcag----------

upper sequence: GLYMA02G04320.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G23310.1 (Arabidopsis thaliana), 5'ss of exon 13
AACAGGCTGGAAAGGTTCCAGATGTTTACTACTGCCTCAAGCTTTTGGAAGCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaacttatacatttattctcatgtttatccccttttcttttcctttctttagagtgattccacatgcctattcctatggttttcatgcaatgagaa
|||| |||||||| || ||||| |||| |||||| |||||||| || |||||||| || || ||||| || ||||| || |||||||| |||||||||||||| | | |  | |   || | |    ||  | | | | |  | || | | | |  | | ||||||| ||   |||   |  |                 
AACAAGCTGGAAAAGTGCCAGACGTTTTCTACTGTCTCAAGCTCTTAGAAGCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatc-tgctactactgtttctttcttgctcatctgatctcttct-tatgaactcattccacttgtggattttgacag-----------------

upper sequence: GLYMA02G04320.1 (Glycine max), 5'ss of exon 14
lower sequence: PP1S215_28V6.1 (Physcomitrella patens), 5'ss of exon 12
AACAGGCTGGAAAGGTTCCAGATGTTTACTACTGCCTCAAGCTTTTGGAAGCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaacttatacatttattctcatgtttatccccttttcttttcctttctttagagtgattccacatgcctattcctatggttt-tcatgcaatgagaa----
|  | || || || | ||| || || | ||| ||| |   |||||||||||| ||||| || || |||||||| |||||||||||||| |||||||| |||||||   |  |  | ||    ||     | |  |  |                |||   |    | |     |  |  ||   || |||  | |||   |    
AGAAAGCAGGGAAAGCTCCTGACGTCTTCTATTGCTTGCGGCTTTTGGAAGCTACTGGAATTTCTACTGTTCCAGGTTCAGGATTTGGCCAGAAAGAGGGgtacatcttcttgaacttgcattc-----tgtttctatgagaaaaagaaaaaaaagaagaagaaaagaaaagaaaacagataacttatcagacgatgtctaccat

upper sequence: GLYMA02G04320.1 (Glycine max), 5'ss of exon 14
lower sequence: PP1S64_220V6.1 (Physcomitrella patens), 5'ss of exon 12
AACAGGCTGGAAAGGTTCCAGATGTTTACTACTGCCTCAAGCTTTTGGAAGCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaacttatacatttattctcatgtttatccccttttcttttcctttctttagagtgattccaca-tgcctattcctatggttttcatgcaatgagaa-----------------------------------------------------------------
  || || || || | ||| ||||| |  |||||| | | |||| | ||||||||||| || |||||||| || || ||||| ||||||||||||||||||||  |  || ||||  |    |   |||| | || |  || |    | |  ||    | | |  | |     |  ||    |  ||  ||    ||                                                                     
GGCAAGCAGGCAAAGCTCCTGATGTCTTTTACTGCTTGAGGCTTCTTGAAGCCACTGGAATTTCCACTGTGCCAGGGTCAGGGTTTGGTCAGAAAGAAGGgtatgattttctacacgtgcatt-gcgtttctaccatcatcgtacattatgcttcagttaactaaatagcagttgatcaccggagttggatcaggtgctgctttcaagcaggaatgattttctacactgttgatcactactgacgtcggccttaatttgtgcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717502|gb|BW654405.1|BW654405
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|120490930|gb|EH219097.1|EH219097
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|120495674|gb|EH223841.1|EH223841
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|120529136|gb|EH257270.1|EH257270
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|120493898|gb|EH222065.1|EH222065
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|31471775|gb|CD413803.1|CD413803
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|31461736|gb|CD403764.1|CD403764
EST:     GCCACTGGCAAATCCCCTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTA
EST: gi|213594117|gb|DB981417.1|DB981417
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAA-GAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|193664230|gb|FK610000.1|FK610000
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|14990047|gb|BI315720.1|BI315720
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|31475863|gb|CD417891.1|CD417891
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|31465137|gb|CD407165.1|CD407165
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|22522821|gb|BU081632.1|BU081632
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|6667735|gb|AW279186.1|AW279186
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCACGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|31464663|gb|CD406676.1|CD406676
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|120495271|gb|EH223438.1|EH223438
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|209697331|gb|BW655572.1|BW655572
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|213612154|gb|DB976815.1|DB976815
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTCCCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|209706986|gb|BW683249.1|BW683249
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|31467900|gb|CD409928.1|CD409928
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|31475761|gb|CD417789.1|CD417789
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|7639756|gb|AW734072.1|AW734072
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|120494927|gb|EH223094.1|EH223094
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|209723921|gb|BW675241.1|BW675241
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|23735380|gb|BU765969.1|BU765969
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|31461996|gb|CD404024.1|CD404024
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|120493211|gb|EH221378.1|EH221378
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|13481701|gb|BG511044.1|BG511044
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|213600111|gb|DB979774.1|DB979774
EST:     GCCACTGGCATATCTACTGTTCCTGGTTCAGGATTTGGTCAGAA-GAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
EST: gi|16349405|gb|BI975000.1|BI975000
EST:     GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGG                         GGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA
genomic: GCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaactt ... atgcttacagGGTGTTCCATTTGAGGACAACTATTTTACCAGCTGAGGAAGACATGCCTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACAGGCTGGAAAGGTTCCAGATGTTTACTACTGCCTCAAGCTTTTGGAAGCCACTGGCATATCCACTGTTCCTGGTTCAGGATTTGGTCAGAAAGAAGGgtacaaacttatacatttattctcatgtttatccccttttcttttcctttctttagagtgattccacatgcctattcctatggttttcatgcaatgagaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccttt