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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGATGGTCTCTCATCTCTTTCACTTTCGACAAAAACAACTTCAAATGCTGCTCCTATGATGAATTTATTGGATGGTTTTGCCCCCAGCCCGCCAACAGgttgtaaactttgtttagcatttgggcattatcattgaatgaaatatagtcaaagtattgattccttgtcctttcttatcttgagtag

Basic information

species Glycine max
transcript GLYMA02G03800.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03800.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 15
TTGGATGGTCTCTCATCTCTTTCACTTTCGACAAAAACAACTTCAAATGCTGCTCCTATGATGAATTTATTGGATGGTTTTGCCCCCAGCCCGCCAACAGgttgtaaac-tttgtttagcatttgggcattatcattgaatgaaatatagtc--aaagtattgattccttgtcctttcttatcttgagtag
    ||   || || ||  | ||  ||    |   | |  || ||   ||||||||||||||| |||| |||||||| |||||||||| ||  |||     | ||||||  ||| |||||| |||    |||  |     | || | |  ||  ||  || ||||| |       ||||||    |     
--TCATCACCT-TCTTCAATATCCATTCAAGCCTCATCTCCTGCAGGGGCTGCTCCTATGATGGATTTGTTGGATGGCTTTGCCCCCAACCTACCATTGCCTGgtaaacacttgattagcacttgaaatttactaggctgtaaagtttgttctcaagataatgattaccatcttcttcttaaacag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888840|gb|BQ742053.1|BQ742053
EST:     ATTTATTGGATGGTTTTGCCCCCAGCCCGCCAACAG                         AAAACAATGGATCGGTTTATCCATCAGTAACTGCATTTGAGAGCAGCTCCT
genomic: ATTTATTGGATGGTTTTGCCCCCAGCCCGCCAACAGgttgtaaact ... tcttgagtagAAAACAATGGATCGGTTTATCCATCAGTAACTGCATTTGAGAGCAGCTCCT