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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAGAGTACGTCTTATTTTGTCTGGAGCAGCACCTTTATCTGCACATGTGGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATGgtatgctcttttaaaatatgaaaataaaacttacaccatgctatcatttttatttgaatcatattattaaacaaattgtaaatactcccattttagttat...

Basic information

species Glycine max
transcript GLYMA01G43470.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43470.3 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os01g46750.1 (Oryza sativa), 5'ss of exon 14
GGTAGAGTACGTCTTATTTTGTCTGGAGCAGCACCTTTATCTGCACATGTGGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATGgtatgctcttttaaaatatgaaaataaaacttacaccatgctatcatttttatttgaatcatattattaaacaaattgtaaatactcccattttagttat---
|| |  || ||| |||||||||| ||||| || ||  |  || | ||||| ||||  ||| |  | |||||||||||||| |||||| |||| |||||||||||    || |    |||     || |    | |  | | ||      | |  | |         | |       | || |||     |||  | | |    
GGAAATGTTCGTGTTATTTTGTCCGGAGCTGCTCCACTTGCTACTCATGTTGAAGAATACCTGAGAGTGGTGACTTGTGCACATGTCTTACAAGGATATGgtatatctttgtttgttatctttgtagag---aaagtaggatagatgcctcacctaagaggggaggtgatctcttatatatatagctgaattacaatgaatgc

upper sequence: GLYMA01G43470.3 (Glycine max), 5'ss of exon 14
lower sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 14
GGTAGAGTACGTCTTATTTTGTCTGGAGCAGCACCTTTATCTGCACATGTGGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATGgtatgc--tcttttaaaat--atgaaaataaaacttacaccatgctatcatttttatttgaatcatattattaaacaaattgtaaatactcccattttagttat-------------------------------------------------------------------------------------------
|| |  ||||| |||||||| |||||||| |||||  | ||| | |||||||||| |||  |||| |||||||||||||||||||| ||||| |||||||||||||  ||  || ||||   ||   |     ||||  |  |   |   ||| | | |||| |||   | |  | |  | ||    ||         |  |||                                                                                           
GGAAACGTACGACTTATTTTATCTGGAGCCGCACCACTCTCTACCCATGTGGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATGgtatgcagtccattgaaattagtgtctacctgtcttatcctttttgactgtttctttgtgaagcattgaaattgaaatttcgttggcacctttgagaaacatatgtccaaagtttttttcccgtttctagtactgtgcaaagtagctttctacatggtgaatttggatctttattttgtattaatgttaatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254347181|gb|GR856851.1|GR856851
EST:     GGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATG                         GTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
genomic: GGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATGgtatgctctt ... atgaaaatagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
EST: gi|22525607|gb|BU084418.1|BU084418
EST:     GTGACTTGTGCTCATGTCCTACAGGGATATG                         GTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
genomic: GTGACTTGTGCTCATGTCCTACAGGGATATGgtatgctctt ... atgaaaatagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
EST: gi|6666183|gb|AW277642.1|AW277642
EST:     GGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATG                         GTCTGACTGANACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
genomic: GGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATGgtatgctctt ... atgaaaatagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
EST: gi|192295718|gb|FG990572.1|FG990572
EST:     GGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATG                         GTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
genomic: GGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATGgtatgctctt ... atgaaaatagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
EST: gi|120533313|gb|EH261446.1|EH261446
EST:     GGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATG                         GTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
genomic: GGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATGgtatgctctt ... atgaaaatagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
EST: gi|22525677|gb|BU084488.1|BU084488
EST:     GTGACTTGTGCTCATGTCCTACAGGGATATG                         GTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
genomic: GTGACTTGTGCTCATGTCCTACAGGGATATGgtatgctctt ... atgaaaatagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG