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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTACGCTGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAGgttaatattttttttcttcaaaatatgttcagttttagtcactttcattctaccttttggcattggtctgttttatttgcttgtccactttgcctgtagtagtaatccgtgactgtttctactgtttgcaacttactgaattgaataacag

Basic information

species Glycine max
transcript GLYMA01G39430.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39430.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os01g64820.1 (Oryza sativa), 5'ss of exon 13
TTCTTACGCTGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAGgttaatattttttttcttcaaaatatgttcagttttagtcactttcattctaccttttggcattggtctgttttatttgcttgtccactttgcctgtagtagtaatccgtgactgtttctactgtttgcaacttactgaattgaataacag
||| || ||||| ||  ||||||||||||| || ||||||||||||||||| ||| |  | ||||||||||| ||||| ||||||||||| || |||||||| || | |    || | ||       | ||| ||   | |||||           ||||  |   | |  || | ||  |   | | |      | || |  |||  |   || | |  | |||| ||    |  | ||           
TTCATATGCTGGTGGCTTGGTTTTGGAGCCTAAAAAGGGTCTATATGACAAGTATGTGCTACTTCTGGACTTTAACAGCCTTTACCCTTCGATAATTCAGgtgaacaatcaacttttacagt-----tacagcttctataacttttgac-------ttggtctccatataattaaattattaaacaaat------gaagaatgaatatgctgctctattgattgttggctttatcttcaaag---------

upper sequence: GLYMA01G39430.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G149802_T02 (Zea mays), 5'ss of exon 13
TTCTTACGCTGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAGgttaatattttttttcttcaaaatatgttcagttttagtcactttcattctaccttttggcattggtctgttttatttgcttgtccactttgcctgtagtagtaatccgtgactgtttctactgtttgcaacttactgaattgaataacag
||| || ||||| ||| | ||||||||||| |||||||||||||||||||| ||| |  | ||||| ||||||||||| ||||||||||| || |||||||| |||      |    |||   | | |    ||||  |  ||  |  | ||   |||   ||       || ||  || |   | |  ||   ||| | |  | ||                                            
TTCATATGCTGGTGGATTAGTTTTGGAGCCTAAGAAGGGTCTATATGACAAGTATGTTCTACTTCTCGACTTCAACAGCCTTTACCCTTCAATAATTCAGgtaaatggccagtac--tcagcttctataattttttgcttgctccc--tgtaaagtttaagataaacaaattatagatgtt---ctatcttcaatgtgggaa-actct-------------------------------------------

upper sequence: GLYMA01G39430.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G67100.1 (Arabidopsis thaliana), 5'ss of exon 13
TTCTTACGCTGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAGgttaatattttttttcttcaaaatatgttcagttttagtcactttcattctaccttttggcattggtctgttttatttgcttgtccactttgcctgtagtagtaatccgtgactgtttctactgtttgcaacttactgaattgaataacag
  | |||||||| |||||||| |||||||||||||  ||  |||||||||||||| | ||||||||||| ||||| |||||||||||||||||||| |||||||  |  || |||||     || | |  ||  || |     |   | |  |   |||| | |   | ||  |  |   ||                                                                     
AGCCTACGCTGGTGGACTGGTCTTGGAGCCAAAGAGAGGCTTATATGACAAATATGTCTTGCTTCTGGATTTCAATAGTCTTTACCCTTCTATTATACAGgttagcagattgtttct-----atttctcaagcctttggtggatgtttccgcctgcttggtagttaacagtcatgatattttcag------------------------------------------------------------------

upper sequence: GLYMA01G39430.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv07s0031g00470.t01 (Vitis vinifera), 5'ss of exon 12
TTCTTACGCTGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAGgttaatattttttttcttcaaaatatgttcagttttagtcactttcattctaccttttggcattggtctgttttatttgcttgtccactttgcctgtagtagtaatccgtgactgtttctactgtttgcaacttactgaattgaataacag--------------
  | ||| | || ||| |||||||||| |||||||  ||  | |||||||| |||||||| ||| |||||||||| || ||||||||||| || |||||||| ||| |  ||||   ||    |   | |  | |   ||  | ||  |||  ||      ||  |||  | | | |   |   || |    ||      | | |   ||  || || || || ||    | ||  |      | ||| |               
AGCCTACTCCGGTGGATTGGTTTTGGAACCAAAGAGAGGCTTGTATGACAAGTATATATTACTTTTGGACTTCAATAGCCTTTACCCTTCAATCATTCAGgt-aatttgcttttctctctcccttcttactctctctctctttatctatctctctccctctatctgtccatctaactctatctccctccaccccctctccaatcaattgtttcttttcctccttttacatattttttatgagcactaatacttcattgtttacag

upper sequence: GLYMA01G39430.1 (Glycine max), 5'ss of exon 14
lower sequence: PP1S257_37V6.1 (Physcomitrella patens), 5'ss of exon 16
TTCTTACGCTGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAGgttaatattttttttcttcaaaatatgttcagttttagtcactttca--ttctaccttttggcattggtctgttttatttgcttgtccactttgcctgtagtagtaatccgtgactgtttctactgtttgcaacttactgaattgaataacag----------------------
| ||||   ||| ||| | ||  ||||||| || |||||||| ||||| |||||||| ||||| || |||||||||||| | || || || || |||||||||   |         |||  |   |  |   ||||    | ||| |  |||||   | |   | | |||  ||||  | | |       ||  ||  |   || |     | |   ||| |    |    |    || | |||    || |                       
TGCTTATCTTGGTGGATTAGTCCTGGAGCCCAAAAAGGGTCTGTATGATAAATATATCTTGCTGCTAGACTTCAACAGTTTGTATCCCTCCATCATTCAGgtt--cacccaacaagttctgagcctaatagattttttctatttttagcttctaaaatctctgagtcgtc--ttttgctcgatatcgagattctcccatttcagaatatgctcatcatttatttcttaaatattcaacagcattagtgaataagttctgatggttcactcttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207810980|gb|GD785505.1|GD785505
EST:     AATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAG                         GAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTT
genomic: AATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAGgttaatattt ... tgaataacagGAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTT
EST: gi|193543700|gb|FK501605.1|FK501605
EST:     AATATATATTGCTTCTGGACTTCAACAGTCTTTACCCATCTATTATTCAG                         GAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTT
genomic: AATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAGgttaatattt ... tgaataacagGAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTT
EST: gi|207751598|gb|GD723563.1|GD723563
EST:     AATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAG                         GAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTT
genomic: AATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAGgttaatattt ... tgaataacagGAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTT