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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACACATGCCTACACCTGAGCAATGGACTAATGTTTTCAATCCGGCATTTTCATACTATGTCTATTACTGTTATGCAAATCTTTACACCTTAAACAAGgtatgtaactttttctccagaatatgtatcaattttttacggcttatctatttactctttcaagaagaaaacaagcttcttttttactgattatggaaag...

Basic information

species Glycine max
transcript GLYMA01G29470.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G29470.2 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os05g28180.3 (Oryza sativa), 5'ss of exon 5
AAAACACATGCCTACACCTGAGCAATGGACTAATGTTTTCAATCCGGCATTTTCATACTATGTCTATTACTGTTATGCAAATCTTTACACCTTAAACAAGgtatgtaactttttctccagaatatgtatcaattttttacggcttatctatttactctttcaagaagaaaacaagcttcttttttactgattatggaaag
||| || |||||||||||||| |||||||| ||||| ||||| || ||||||||||| ||||  |||||||| ||||| ||  | |||||  | || |||||| | || ||   |||      ||   || | ||||              | | | |      ||   ||||  ||||| |   | | |          
AAAGCATATGCCTACACCTGAACAATGGACCAATGTCTTCAACCCAGCATTTTCATATTATGCATATTACTGCTATGCTAACTTATACACACTCAATAAGgtaggaaaattgccctc------atacctctaattttc------------ctcattttgctggaaaagtaaca--cttctgtgcaatttag---------

upper sequence: GLYMA01G29470.2 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G416667_T01 (Zea mays), 5'ss of exon 13
AAAACACATGCCTACACCTGAGCAATGGACTAATGTTTTCAATCCGGCATTTTCATACTATGTCTATTACTGTTATGCAAATCTTTACACCTTAAACAAGgtatgtaactttttctccagaatatgtatcaattttttacggcttatctatttactctttcaagaagaaaacaagcttcttttttactgattatggaaag
||| |||||||| |||||||| || ||||| ||||| ||||| || ||||||||||| ||||  || ||||| ||||| ||  | | |||| ||||||||||    |  | || ||||      |   |||||||| | |   ||            | |||    |  ||  |   | ||   |  | |          
AAAGCACATGCCCACACCTGAACAGTGGACCAATGTGTTCAACCCTGCATTTTCATATTATGCGTACTACTGCTATGCTAACTTATTCACCCTAAACAAGgtgatcatatcttcctcc----ccttcctcaattttctccacgtt------------tctcagagtggtaatgattctgttcaattttcag---------

upper sequence: GLYMA01G29470.2 (Glycine max), 5'ss of exon 14
lower sequence: AT2G38280.1 (Arabidopsis thaliana), 5'ss of exon 13
AAAACACATGCCTACACCTGAGCAATGGACTAATGTTTTCAATCCGGCATTTTCATACTATGTCTATTACTGTTATGCAAATCTTTACACCTTAAACAAGgtatgtaactttttctccagaatatgtatcaattttttacggcttatctatttactctttcaagaagaaaacaagcttcttttttactgattatggaaag
|||||||||||| || || |  ||||||||||| |  |||||||| |||||||| || |||||||| || |||||||| || || ||    ||||| ||||||   |    | |     |  | |||| | |  ||    |  || || |     | |   | | || ||  |   |||||                   
AAAACACATGCCCACTCCAGCTCAATGGACTAACGCATTCAATCCTGCATTTTCGTATTATGTCTACTATTGTTATGCTAACCTCTATGTGTTAAATAAGgtac-cattcctcttagtcgcttctgtaactaacttg---gtgttctcaaaactgtgtaatatggagtaactatttttcttcag----------------

upper sequence: GLYMA01G29470.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 13
AAAACACATGCCTACACCTGAGCAATGGACTAATGTTTTCAATCCGGCATTTTCATACTATGTCTATTACTGTTATGCAAATCTTTACACCTTAAACAAGgtatgtaactttttctccagaatatgtatcaattttttacggcttatctatttactctttcaagaagaaaacaagcttcttttttactgattatg-gaaag-
|||||| |||||||| || |  || ||||| |||| ||||||||| |||||||||||||||||||| ||||||||||| || || || || || ||||||||  ||   |     |  | |||||    |  |  |||     ||  | || ||   |  | || |        | ||  |||  ||  ||  |  || || 
AAAACATATGCCTACTCCAGCTCAGTGGACCAATGCTTTCAATCCTGCATTTTCATACTATGTCTACTACTGTTATGCTAACCTCTATACATTGAACAAGgttcgtgcatgcacttagaaaatatcctcccctacttt--tattttgccatatatgatcaccagtaatgcttttggtttgtttcaacatatggtttgatagt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925052|gb|AW831078.1|AW831078
EST:     TTTCATACTATGTCTATTACTGTTATGCAAATCTTTACACCTTAAACAAG                         CTTCGAGAATCAAATGGAATGAC
genomic: TTTCATACTATGTCTATTACTGTTATGCAAATCTTTACACCTTAAACAAGgtatgtaact ... tatttctcagCTTCGAGAATCAAAGGGAATGAC
EST: gi|254332340|gb|GR846385.1|GR846385
EST:     TTTCATACTATGTCTATTACTGTTATGCAAATCTTTACACCTTAAACAAG                         CTTCGAGAATCAAAGGGAATGACA-CAATCAAATTCCGTCCACATTCTGGA
genomic: TTTCATACTATGTCTATTACTGTTATGCAAATCTTTACACCTTAAACAAGgtatgtaact ... tatttctcagCTTCGAGAATCAAAGGGAATGACAACAATCAAATTCCGTCCACATTCTGGA
EST: gi|9565158|gb|BE474667.1|BE474667
EST:     TTTCATACTATGTCTATTACTGTTATGCAAATCTTTATACCTTAAACAAG                         CTTCGAGAATCAAAGGGAATGACGACAATCAAATTCCGTCCACATTCTGGA
genomic: TTTCATACTATGTCTATTACTGTTATGCAAATCTTTACACCTTAAACAAGgtatgtaact ... tatttctcagCTTCGAGAATCAAAGGGAATGACAACAATCAAATTCCGTCCACATTCTGGA