Sequence
atgc intronic sequence ATGC exonic sequenceGTCCCTCTTAACAATATGTTTGGATACTCTACAGCTCTTCGCTCAATGACACAGgtgagtgtcatgcactcgagaatatttcgtgttttgctgttaatttgtatttggtttttaatttcctggttgttctttaataactgcag
Basic information
species | Glycine max |
transcript | GLYMA01G14800.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G14800.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os03g36780.1 (Oryza sativa), 5'ss of exon 19
GTCCCTCTTAACAATATGTTTGGATACTCTACAGCTCTTCGCTCAATGACACAGgt-gagtgtcatgcactcgagaatatttcgtgttttgct--gttaatttgtatttggtttttaatttcctggttgttct--ttaat--aactgcag-----
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GTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACACAGgtcaaatgttattcttctatactttgtctatcttttattttattgacttatatata-cccagaaaatgctctttgttttagtcagtcaaactactctgtga
upper sequence: GLYMA01G14800.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 19
GTCCCTCTTAACAATATGTTTGGATACTCTACAGCTCTTCGCTCAATGACACAGgtga------gtgtcatgcactcgagaatatttcgtgttttgctgttaatttgtatttggtttttaatt---tcctggttgttctttaataactgcag
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GTCCCTCTAAACAATATGTTTGGGTACTCAACATCACTTCGTTCAATGACTCAGgtaaaactaagtatcattttataagggctatgccatagct-ggagttgctctgcagaatatgttaaaatatatgttatttgatcctctatg--tgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208126774|gb|GD921230.1|GD921230EST: CTCTTAACAATATGTTTGGATACTCTACAGCTCTTCGTTCAATGACACAG GGCAAAGGTGAATTCACAATGGAATACAAGGAACATTCACCAGTTTCTCAT
genomic: CTCTTAACAATATGTTTGGATACTCTACAGCTCTTCGCTCAATGACACAGgtgagtgtca ... ataactgcagGGCAAAGGTGAATTCACCATGGAATACAAGGAACATTTACCAGTTTCTCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCCCTCTTAACAATATGTTTGGATACTCTACAGCTCTTCGCTCAATGACACAGgtgagtgtcatgcactcgagaatatttcgtgttttgctgttaatttgtatttggtttttaatttcctggttgttctttaataactgcag
- - - - - - - - - - - - - - - CAGCTC