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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAAGTTCAGATGATGCTCCTGCACCTAGCTCTTCTAGTGGAGGAGATATTCTTCAGGACCTTCTTGGTGTTGATCTTTCACCAGCATCACAACAATCTGgttagtatttgtagtgtatcttataaattattatgattcctgaaaactaatttttttttgtatttaataattaccatctttgtttatgcatctctgcttt...

Basic information

species Glycine max
transcript GLYMA01G03890.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03890.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 14
---CTAAGTTCAGATGATGCTCCTGCACCTAGCTCTTCTAGTGGAGGAGATATTCTTCAGGACCTTCTTGGTGTTGATCTTTCACCAGCATCACAACAATCTGgttagtatttgtagtgtatcttataaattattatgattcctgaaaactaatttttttttgt-atttaataat---taccatctttgtttatgcatctctgcttt-
   ||||||||||||||| | ||||||||||| |||||| |||| |   || | ||||| || ||||||||||||||  | ||    |  |||  |   || ||||||| ||||   |     | |||  | || || |     ||||    || | ||    | ||||   |||   | | | || | |  ||   | | ||  || 
GATCTAAGTTCAGATGATACCCCTGCACCTAGTTCTTCTGGTGGTG---ATTTCCTTCATGATCTTCTTGGTGTTGACTTATCTGTGGGTTCATCATTGTCAGgttagtttttgagat-----tcatatctcatgatcacctgagaaattgcatctcttcccattattttccaatgtatgctagctctatgcatctgtttttgtattc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9440480|gb|BE440984.1|BE440984
EST:     TCTTCAGGACCTTCTTGGTGTTGATCTTTCACCAGCATCACAACAATCTG                         TTGCTGGCCAAGCTTCAAAAAGTGGCAACGATGTTCTTTTGGATCTTTTGT
genomic: TCTTCAGGACCTTCTTGGTGTTGATCTTTCACCAGCATCACAACAATCTGgttagtattt ... gcatttttagTTGCTGGCCAAGCTTCAAAAAGTGGCAACGATGTTCTTTTGGATCTTTTGT
EST: gi|9259539|gb|BE347694.1|BE347694
EST:     TCTTCAGGACCTTCTTGGTGTTGATCTTTCACCAGCATCACAACAATCTG                         TTGCTGGCCAAGCTTCAAAAAGTGGCAACGATGTTCTTTTGGATCTTTTGT
genomic: TCTTCAGGACCTTCTTGGTGTTGATCTTTCACCAGCATCACAACAATCTGgttagtattt ... gcatttttagTTGCTGGCCAAGCTTCAAAAAGTGGCAACGATGTTCTTTTGGATCTTTTGT
EST: gi|17518713|gb|BM187755.1|BM187755
EST:     TCTTCAGGACCTTCTTGGTGTTGATCTTTCACCAGCATCACAACAATCTG                         TTGCTGGCCAAGCTTCAAAAAGTGGC
genomic: TCTTCAGGACCTTCTTGGTGTTGATCTTTCACCAGCATCACAACAATCTGgttagtattt ... gcatttttagTTGCTGGCCAAGCTTCAAAAAGTGGC