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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCAATACAAGTTGATGCATCTATCACAGCATTATCCCTGTCCCCAAACATGGATATATTAGCAACTACCCATGTTGATCAAAATGGAATATACCTGTGgtgagtttccaaagttattttcttggttcatggaacataattttgtggataacgttttctacttttctaaatgtttattgcatctaatagatatattcgt...

Basic information

species Glycine max
transcript GLYMA01G00460.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G00460.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv08s0007g00730.t01 (Vitis vinifera), 5'ss of exon 14
ATGCAATACAAGTTGATGCATCTATCACAGCATTATCCCTGTCCCCAAACATGGATATATTAGCAACTACCCATGTTGATCAAAATGGAATATACCTGTGgtgagtttccaaagttattttcttggttcatgga----acataattttgtggataacgttttctacttttctaaatgtttattgcatctaatagatatattcgt-
|||| || || |||||||  ||| | |||||| | || || || || || |||||| | ||||||||||| |||||||||||||||||  | || ||||||| | ||||     || | |  ||  | |  |      || ||| |   | | | || |  |  | |||||||  ||  |||   ||||  ||  | | |||   
ATGCTATTCATGTTGATGTGTCTGTAACAGCACTGTCTCTTTCACCCAATATGGATGTTTTAGCAACTACTCATGTTGATCAAAATGGGGTCTATCTGTGgtaaatttcagtctttgtctgattcatgctcgtctttcacctaaatcatttggtcac-tggttgatttttctatttgaatatg--atct--tatgtgttttcaac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811463|gb|BQ295941.1|BQ295941
EST:     ATGGATATATTAGCAACTACCCATGTTGATCAAAATGGAATATACCTGTG                         GGTAAACCAGGCAATGTTCTCTAGTACTTCAAATGTTGATTCATGCGCAAG
genomic: ATGGATATATTAGCAACTACCCATGTTGATCAAAATGGAATATACCTGTGgtgagtttcc ... attttatcagGGTAAACCAGGCAATGTTCTCTAGTACTTCAAATGTTGATTCATGCGCAAG