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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCCgtaagcaatcaaatgcttgtgaaatataagttttatccatcttccattccacctactccaccattcaattttttttttaactttttaatgtttccttatgtatggtgtatag

Basic information

species Glycine max
transcript GLYMA01G00430.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G00430.2 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os02g04710.1 (Oryza sativa), 5'ss of exon 13
ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCCgtaagcaatcaaatgcttgtgaaatataagttttatccatcttccattccacctactccaccattcaattttttttttaactttttaatgtttccttatgtatggtgtatag
 | |||||||||||||| || ||||| ||||| || ||||||||||||||||  || | |  |   |  | |    ||  | |     | |  | |||  ||       |    || ||| |||    | | |  | | |   | | ||   | |||||
CTTATCAATCCTGCTGAGACCTTTGGGGACATTGTGATTGATTATCCgtaagacattaca-acccatccatt----gtcctcttttcttgctttgccatgtagaaggtgaactgatctttctttcc-ttctctcctttgtatgtgtataaaatttatag

upper sequence: GLYMA01G00430.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv11s0065g00640.t01 (Vitis vinifera), 5'ss of exon 14
ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCCgtaagcaatcaaatgcttgtgaaatataagttttatccatcttccattccacctactccaccattcaattttttttttaactttttaatgtttccttatgtatggtgtatag
 ||||||||||||||||||||||||| ||||| |||||||||||||||||||  ||       |||   |||   | ||  |    ||||   ||    | |||  |   || |  | | |   |||  |    ||||                     
TTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCCgtaagatattggcactttgattaatgctatttgcaatattcttttgtttatgcaactttatagttta--tctctaactaatatgactatgtag-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18733901|gb|BM527876.1|BM527876
EST:     ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC                         TTATGTGGAATGTACATCAGCAGCGAT
genomic: ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCCgtaagcaatc ... tggtgtatagTTATGTGGAATGTACATCAGCAGCGAT
EST: gi|22524821|gb|BU083632.1|BU083632
EST:     ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC                         TTATGTGGAATGTACATCAGCAGCGATTCAAGCTTTGGCATCATTTAGGAA
genomic: ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCCgtaagcaatc ... tggtgtatagTTATGTGGAATGTACATCAGCAGCGATTCAAGCTTTGGCATCATTTAGGAA
EST: gi|42723073|gb|CK768972.1|CK768972
EST:     ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC                         TTATGTGGAATGTACATCAGCAGCGATTCAAGCTTTGGCATCATTTAGGAA
genomic: ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCCgtaagcaatc ... tggtgtatagTTATGTGGAATGTACATCAGCAGCGATTCAAGCTTTGGCATCATTTAGGAA
EST: gi|18732433|gb|BM527041.1|BM527041
EST:     ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC                         TTATGTGGAATGTACATCAGCAGCGATTCAAGCTTTGGCATCATTTAGGAA
genomic: ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCCgtaagcaatc ... tggtgtatagTTATGTGGAATGTACATCAGCAGCGATTCAAGCTTTGGCATCATTTAGGAA
EST: gi|51344264|gb|CO984997.1|CO984997
EST:     ACATCGTTATTGATTATCC                         TTATGTGGAATGTACATCAGCAGCGATTCAAGCTTTGGCATCATTTAGGAA
genomic: ACATCGTTATTGATTATCCgtaagcaatc ... tggtgtatagTTATGTGGAATGTACATCAGCAGCGATTCAAGCTTTGGCATCATTTAGGAA
EST: gi|19269470|gb|BM885726.1|BM885726
EST:     ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC                         TTATGTGGAATGTACATCAGCAGCGATTCAAGCTTTGGCATCATTTAGGAA
genomic: ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCCgtaagcaatc ... tggtgtatagTTATGTGGAATGTACATCAGCAGCGATTCAAGCTTTGGCATCATTTAGGAA
EST: gi|13789963|gb|BG652554.1|BG652554
EST:     ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC                         TTATGTGGAATGTACATCAGCAGCGATTCAAGCTTTGGCATCATTTAGGAA
genomic: ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCCgtaagcaatc ... tggtgtatagTTATGTGGAATGTACATCAGCAGCGATTCAAGCTTTGGCATCATTTAGGAA
EST: gi|10253317|gb|BE821083.1|BE821083
EST:     AGATAATCAATCNTGCTGAAACTTTTGNNGACATCGTTATTGANTATNC                         TTATGTGGAATGTACATCAGCAGCGATTCAAGCTNNNGCATCATTTAGGAA
genomic: AGATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCCgtaagcaatc ... tggtgtatagTTATGTGGAATGTACATCAGCAGCGATTCAAGCTTTGGCATCATTTAGGAA
EST: gi|24136389|gb|BU926899.1|BU926899
EST:     ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC                         TTATGTGGAATGTACATCAGCAGCGATTCAAGCTTTGGCATCATTTAGGAA
genomic: ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCCgtaagcaatc ... tggtgtatagTTATGTGGAATGTACATCAGCAGCGATTCAAGCTTTGGCATCATTTAGGAA