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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCCAGTGAAAAAGGTCGGAGCATATTGTTGGCTCTCTCTTGCCATTTGCATTGTGGAACTTCTGATTTGCATTAAGTTTGGACACGgtagttctcttaattaattattgtgtcatattttgaagttagtatgcattaatcattgtataattcactgattacattcatggtggttgtgtttccacag

Basic information

species Glycine max
transcript GLYMA20G25830.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25830.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 12
AAAGCCAGTGAAAAAGGTCGGAGCATATTGTTGGCTCTCTCTTGCCATTTGCATTGTGGAACTTCTGATTTGCATTAAGTTTGGACACGgtagttctcttaatt---aattattgtgtcatat-tttgaagttagtatgcattaatcattgtataattcactgatta--cattcatggtggttgtgtttccacag-------------------------------------------
||| |||||||||||||| ||||| | ||||||||| || ||||| ||||||||| | ||||| || |||||||| ||||||||||| |||   |  | || |    ||  ||| |     |  ||| |||||  |    ||||   ||||  ||| |  || || |   ||| |||     |   | |  | |                                            
AAAACCAGTGAAAAAGGTGGGAGCGTTTTGTTGGCTTTCCCTTGCTATTTGCATTATTGAACTACTCATTTGCATCAAGTTTGGACATGgtttgttccctattctaaaagcattataatgaacatttcaagtt--tgcttattacctattggttaactggctaatcaagtattgatgtctagttgatgtgtaaaacttgcctgctgacatttgtgaactgttattttactcttaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5761127|gb|AI966490.1|AI966490
EST:     GCCATTTGCATTGTGGAACTTCTGATTTGCATTAAGTTTGGACACG                         GCTTGTATCCAAAATCAATGCCTATATGGCTGGTAATATTCTGGTCAGGTG
genomic: GCCATTTGCATTGTGGAACTTCTGATTTGCATTAAGTTTGGACACGgtagttctct ... gtttccacagGCTTGTATCCAAAATCAATGCCTATATGGCTGGTAATATTCTGGTCAGGTG
EST: gi|51338181|gb|CO982047.1|CO982047
EST:     TCTTGCCATTTGCATTGTGGAACTTCTGATTTGCATTAAGTTTGGACACG                         GCTTGTATCCAAAATCAATGCCTATATGGCTGGTAATATTCTGGTCAGGTG
genomic: TCTTGCCATTTGCATTGTGGAACTTCTGATTTGCATTAAGTTTGGACACGgtagttctct ... gtttccacagGCTTGTATCCAAAATCAATGCCTATATGGCTGGTAATATTCTGGTCAGGTG