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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGGCAGTATCGAAGAAGGAAAAGCCACTCTTAGAATGAAGCAGGACATGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAGgtaagtactcaactgcatttttttattgctcaaatttctttgggagataataatttatttcttatgacgtgaatgctttctgcatcttag

Basic information

species Glycine max
transcript GLYMA20G25120.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os05g08990.1 (Oryza sativa), 5'ss of exon 12
AAATGGCAGTATCGAAGAAGGAAAAGCCACTCTTAGAATGAAGCAGGACATGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAGgtaagtactcaactgcatttttttattgctcaaatttctttgggagataataatttatttcttatgacgtgaatgctttctgcatcttag
  ||||     | |  || ||||| || |||||||| ||||| || |||||||||| ||||||| | || |||  |||| | || ||||||||||| |||||||  | |   |  |||| |    || ||    ||||| ||     ||  | || || | ||   |  |   | |              
GCATGGGTTGGTTGCTGAGGGAAAGGCAACTCTTAGGATGAAACAAGACATGCAGAATGATAACAAGAACATGGCTGACTTAATAGCATATAGAATAAAGgtaaacaatt--cgacattatggagttact--gttttctgtgaagtgtagaatttaatatatttctatatatctacacag----------

upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 13
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 13
AAATGGCAGTATCGAAGAAGGAAAAGCCACTCTTAGAATGAAGCAGGACATGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAGgtaagtactcaactgcatttttttattgctcaaatttctttgggagataataatttatttcttatgacgtgaatgctttctgcatcttag--
|   ||||  || || ||||| || || || || ||||||||||| || ||||||||||| || |  ||||||||||| |||||||| ||| |||| |||| ||||    ||||  | |  | | | | | | || |     | ||    |   |  | | ||      ||| |  ||  |     ||    
ACGAGGCATCATTGAGGAAGGGAAGGCAACCCTAAGAATGAAGCAAGATATGCAGAGTGACAATTTTAATATGTATGATCTTATTGCCTATCGAATAAAGgcaagtg--aaactaaaatcctctctagtt-acatataaaaagtaggctctctctcttcttttcctgtctgacttgttaatatgctttgcag

upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 13
AAATGGCAGTATCGAAGAAGGAAAAGCCACTCTTAGAATGAAGCAGGACATGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAGgtaagtactcaactgc-atttttttattgctcaaatttctttgggagataataatttatttcttatgacgtga-atgctttctgcatcttag-
|   || |  || |||||||| ||||| || || ||||||||||| ||||||||||||||||| || ||||||||||| || ||||||||| | || |||| |||| || | ||   |   | || | ||||| |||        || || || | | | |   | |   ||| ||  ||  |     |    
ACGGGGAATGATTGAAGAAGGGAAAGCGACACTCAGAATGAAGCAAGACATGCAGAGTGATAATTATAATATGTATGATCTCATTGCATATCGTATCAAGgcaagtgctaacctttgaacatgttgtagctcacattc------aaggtactactctttattcaagggtttgacatttttgttattcgtccag

upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 13
AAATGGCAGTATCGAAGAAGGAAAAGCCACTCTTAGAATGAAGCAGGACATGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAGgtaagtactcaactgca--tttttttattgctcaaatttctttgggagataataatttatttcttatgacgtgaatgctttctgcatct--tag-----------------------
|   ||||  || |||||||| ||||| || ||| | |||||||| ||||||||||||||||| |  |||||||||||||||||||||||| | || |||| ||||    |     |    | || | |  |  ||   | |  | || || ||| |||  | | |  |    ||     |  | |  |  ||                        
ACGAGGCATGATTGAAGAAGGCAAAGCTACGCTTCGGATGAAGCAAGACATGCAGAGTGATAATTTTAATATGTATGACCTTATTGCATATCGCATCAAGgcaagtctgtactcatagacatcttaactatttcaa---catgagtagttactaaattacctatcaaaaaaaaaaaaacatgagtagttactaattgatttcacttcttttgtccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193727138|gb|FK660296.1|FK660296
EST:     TGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAG                         TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTAT
genomic: TGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAGgtaagtactc ... tgcatcttagTTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTAT
EST: gi|151409608|gb|EV279416.1|EV279416
EST:     TGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAG                         TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTAT
genomic: TGCAGAGTGATAACTACAATATGTATGACCTTATTGCATATAGAATTAAGgtaagtactc ... tgcatcttagTTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTAT