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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTAAACTTCATGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGCTTCTGGTCACTGgtatgttacttgctcgttaagcatatagcataaatgttcaagtacatatttgaagaaagtcagtactttgaatcatatgttgtag

Basic information

species Glycine max
transcript GLYMA20G25100.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 5'ss of exon 6
GTGTTAAACTTCATGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGCTTCTGGTCACTGgtatgttacttgctcgttaagcatatagcataa----atgttcaagtacatat---ttgaagaaagtcagtactttgaatcatatgttgtag-------------------------------------------------------------------------------------------
|| |||||||||||||||||||| || ||  |||| |||||||  || || || ||||||||||||||||  |||   |   |  || |    | |     | |  || || || |   |||  ||  | |  |  |||||  ||||| |    |                                                                                           
GTTTTAAACTTCATGTGGCTAAAGTTCTTTTTGATGTGGCGCTACTTTCGATTATGGTCACTGgtatgttcattgaaagcgtataattttcttttattttgtttctaattaaatctgtgttgtggatggactattatttga-ccatatatatctgaaatttcagtggtaacaaacttttagttttagaattggtgtctgaacactcatgggaagaatttttttcttctataattatgtgattgtag

upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv00s0449g00010.t01 (Vitis vinifera), 5'ss of exon 6
GTGTTAAACTTCATGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGCTTCTGGTCACTGgtatgttacttgctcgttaagcatatagcataa----atgttcaagtacatatttgaagaaagtcag-tact-ttgaatcatatgttgtag------------------------------------------------------------------------------------------
|| |||||||||||||||||||| || ||  |||| |||||||  || || || ||||||||||||||||  |||   ||  |  || |    | |     | || || || || | ||  |    |    || | ||| |||| || |    |                                                                                          
GTTTTAAACTTCATGTGGCTAAAGTTCTTTTTGATGTGGCGCTACTTTCGATTATGGTCACTGgtatgttcattgaaagtgtataattttcttttattttgtttttaattaaatctgtgttgtggatggactattattggatcagatttatctgaaatttcagtggtaacaaactttgagttttagattggtgtctgaacactcatgggaagaatttttttcctctataattatgtgattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208093647|gb|GD892294.1|GD892294
EST:     GTGGCTAAAATTTTTACTGATCTGGCGCTTTTTTCCGTTTCTGGTCACTG                         ATAAACGGAATTGAGGCTCCAGAGAATATGCCAAAATGTATTAATAATTGT
genomic: GTGGCTAAAATTTTTACTGATCTGGCGC-TTTTTCCGCTTCTGGTCACTGgtatgttact ... tatgttgtagATAAACGGAATTGAGACTCCAGAGAATATGCCAAAATGTATTAATAATTGT