Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAGgtaaggataatcttgcttgtttgatatctaggtgctttaaagtgataaatattttctgattcttaattaatgcaaagtggttcacgctctaatggtgcatcattggtcacttctgcag

Basic information

species Glycine max
transcript GLYMA20G24070.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 12
ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAGgtaaggataatctt--gcttgtttgatatctaggtgctttaaagtgataaatattttctgattcttaattaatgcaaagtggttcacgctctaatggtgcatcattggtcacttctgcag
|| || ||||| ||||| ||||| ||||| |||||||| ||||||||||||||   | | ||  |  |||||      |   || || || || |    ||    |   ||   || |  ||||                                            
ATTTATCCACCTATCAATGTCCTGCCATCTCTATCTCGATTGATGAAGgtaagataagttttctgtatgttttcagcatttatg-ttgaaggttagttgtaagaaccacttaacaactcctgcag-------------------------------------------

upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 12
ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAGgtaaggataatcttgcttgtttgatatctaggtgctttaaagtgataaatattttctgattcttaattaatgcaaagtggttcacgctctaatggtgcatcattggtcacttctgcag
||||||||||||||||| |||||||||||||| ||||| || ||||||||||       ||||||| ||  |||       ||  |||  |     | ||||| | | |   | ||  ||  ||| || | ||    |    ||  |   ||||| | | ||||||
ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaa------ccttgcttattgcataa------gccctaagct--cggagattttttaaatggaagttc-tgacaaggggcttacatcat----gtaaaatgttggtaattcctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120495604|gb|EH223771.1|EH223771
EST:     ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG                         AGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAAC
genomic: ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAGgtaaggataa ... acttctgcagAGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAAC
EST: gi|21256304|gb|BQ453192.1|BQ453192
EST:     ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG                         AGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAAC
genomic: ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAGgtaaggataa ... acttctgcagAGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAAC
EST: gi|16279439|gb|BI943437.1|BI943437
EST:     ATATACCCACCAATCAACGTCCTCCCATCACTATCTCAGTTGATGAAG                         AGTGCTATTGGTGAGGGAATGACTAGTATGGATCATTCTGATGTGTCCAAC
genomic: ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAGgtaaggataa ... acttctgcagAGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAAC
EST: gi|16276744|gb|BI942021.1|BI942021
EST:     ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG                         AGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAAC
genomic: ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAGgtaaggataa ... acttctgcagAGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAAC
EST: gi|37996030|gb|CF807619.1|CF807619
EST:     ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG                         AGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAAC
genomic: ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAGgtaaggataa ... acttctgcagAGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAAC
EST: gi|16278548|gb|BI942962.1|BI942962
EST:     ATATACCCACCAATCAACGTGCTCCCATCACTATCTCGGTTGATGAAG                         AGTGCTATTGGTGAAGGAATGACTAGAAGGGATCATTCTGATGTGTCCAAA
genomic: ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAGgtaaggataa ... acttctgcagAGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAA-
EST: gi|21601974|gb|BQ612305.1|BQ612305
EST:     ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAG                         AGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAAC
genomic: ATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAGgtaaggataa ... acttctgcagAGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAAC