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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACCTTGTCGGGTCACACTGAACAGCGAACCAATGCCATCATGATCACCAGCACCATTACTGTTGTGCTTGTCAGCACAATGgtaagacgcatgcttcttctaaatttgtttgacatttcatggttttgttaatatagagattttgctttctgcttcgatcataattactcctaggttaacc...

Basic information

species Glycine max
transcript GLYMA19G42900.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42900.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 5'ss of exon 14
TTCACCTTGTCGGGTCACACTGAACAGCGAACCAATGCCATCATGATCACCAGCACCATTACTGTTGTGCTTGTCAGCACAATGgtaagacgcatgcttcttctaaatttgtttgacatttcatggtt-ttgttaatatagagattttgctttctgc--ttcgatcataattactcctaggttaacc
||||||   || ||||| ||||||  ||||| |||||| |||||||||||||||||  | | |||||| ||  ||||||||||||||||     |  | |||      |  | | |  ||  |||||| || |      ||    | |  ||   ||  |  | | |||  |      |  ||    
TTCACCGCATCTGGTCATACTGAATTGCGAATCAATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATGgtaagg-atgtaatgctttctctctgttattatcttggatggttattttctgctcagcaggtgtatttctagcaatctgttgatagatttgtgcacttttg--

upper sequence: GLYMA19G42900.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G063492_T01 (Zea mays), 5'ss of exon 14
TTCACCTTGTCGGGTCACACTGAACAGCGAACCAATGCCATCATGATCACCAGCACCATTACTGTTGTGCTTGTCAGCACAATGgtaagacgcatgcttcttctaaat----ttgtttgacatttcatggttttgttaatatagagattttgctttctgcttcgatcataattactcctaggttaacc
|| ||    || ||||||||||||  ||||  |||||| |||||||||||||||||  ||| |||||| ||  |||||||||||||||| ||  ||||    || | |    |  | |     ||||| | | ||    | || | | |              ||  || |     || ||| ||   
TTTACAGCATCTGGTCACACTGAAGTGCGAGTCAATGCTATCATGATCACCAGCACAGTTATTGTTGTTCTATTCAGCACAATGgtaagccgtctgctataccttattattatcatcttgttcttcatagatgtgcgtgt-tacatagtccagcacaaaacatgacaatgaaacggccaagggta---

upper sequence: GLYMA19G42900.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 13
TTCACCTTGTCGGGTCACACTGAACAGCGAACCAATGCCATCATGATCACCAGCACCATTACTGTTGTGCTTGTCAGCACAATGgtaaga-cgcatgctt-cttctaaatttgtttgacatttcatggttttgttaatatagagattttgctttctgcttcgatcataattactcctaggttaacc---
||  |   |||||| || ||| ||  |||| | ||||| |||||||| ||||||||||| || ||||| ||| |||||||| |||||||  | | ||| | | ||  ||  |  |    ||   | |  |||| |  | |     | |||     |     |||    ||| |    |  || |     
TTTGCAAGGTCGGGACATACTCAATTGCGATCAAATGCAATCATGATTACCAGCACCATAACAGTTGTTCTTTTCAGCACAGTGgtaagttctcctgcctgcatcacaaaatactgcttatacta-gactttggtggtttc----tcttgggcattagaaagatttatatttccatcattttgaattca