Sequence
atgc intronic sequence ATGC exonic sequenceTCTACTTTCGAATGCACGATGGTGGCTGGATGAATACAAGTTTGATGGATTTCGATTTGATGGTGTTACATCAATGATGTACACACATCATGGATTGGAGgtaattgaattttgtgtttggtctttaagtttcttggtattttaagataacttggctacctttttcttagttaagtgttcaaggattactggattgccaa...
Basic information
species | Glycine max |
transcript | GLYMA19G37750.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G37750.2 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 13
TCTACTTTCGAATGCACGATGGTGGCTGGATGAATACAAGTTTGATGGATTTCGATTTGATGGTGTTACATCAATGATGTACACACATCATGGATTGGAGgta-attg----aattttgt-gtttggtcttta--agtttcttggt-attttaagat--aacttggctacctttttcttagttaagtgttcaaggattactggattgccaa-------------------------------
|||||| || |||||| |||||||||| || || || ||||||||||| || ||||||| ||||| || |||||||||||||| ||||||||||| | ||| |||| ||| | || |||| | | ||||| | || | | | ||| | || | ||| |||| |||| | || | |
TCTACTATCCAATGCAAGATGGTGGCTCGAGGAGTATAAGTTTGATGGTTTCAGATTTGACGGTGTAACCTCAATGATGTACACTCATCATGGATTACAAgtatattgcttcgttttcattactttatcttcactaccttcttaattatgatggggtcaaacctagcagttgctatct--gttacaatttcatatttatttgcgtcataacctttatcttatgattccaccctctattttag
upper sequence: GLYMA19G37750.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G032628_T01 (Zea mays), 5'ss of exon 13
TCTACTTTCGAATGCACGATGGTGGCTGGATGAATACAAGTTTGATGGATTTCGATTTGATGGTGTTACATCAATGATGTACACACATCATGGATTGGAGgtaatt-gaattttgtgtttg-------gtctt-------taagtttc-ttggtattttaagata-acttggctacc--tttttcttagttaagtgtt---caaggattactggattgccaa--------------------------
||| || || ||||| |||||||||| || ||||| ||||||||||| || || ||||||||||| || || ||||||||||| ||||| ||||| | |||||| | ||| || || |||| ||||| | ||| || | || | ||| || |||| ||||| | || | || | | | | |
TCTTCTCTCCAATGCTAGATGGTGGCTCGAGGAATATAAGTTTGATGGTTTCCGTTTTGATGGTGTGACCTCCATGATGTACACTCATCACGGATTACAAgtaatttaagctttatgcctgttagtttatcttcacttgctaagtctgactggaatactggattatgcctgggaactagttttgtttagtatcatatttgttatatatcattccttcttctaatctaaagtcatgcattttactttag
upper sequence: GLYMA19G37750.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 13
TCTACTTTCGAATGCACGATGGTGGCTGGATGAATACAAGTTTGATGGATTTCGATTTGATGGTGTTACATCAATGATGTACACACATCATGGATTGGAGgtaattgaattttgtgttt--ggtctttaagtttcttggtatttta--agataacttg-gcta-cctttttcttagttaagtgttcaaggattactggattgccaa
|||| | || ||||| |||||||||| || ||||| || |||||||| |||||||||||||| || || || |||||||| || || |||||||| | |||| | | | || || | |||| ||| | || | | ||| ||| || |||||| | ||| || || | || |||||
TCTATTGTCAAATGCGAGATGGTGGCTTGAAGAATATAAATTTGATGGGTTTCGATTTGATGGGGTGACCTCCATGATGTATACTCACCATGGATTACAAgtaagtttaccagataattcaagtagtctgatttcacggttctctagtgggtgcattgtgctgtccgttttctgaaataattgctc------tgcttaattgcatg
upper sequence: GLYMA19G37750.2 (Glycine max), 5'ss of exon 13
lower sequence: AT5G03650.1 (Arabidopsis thaliana), 5'ss of exon 13
TCTACTTTCGAATGCACGATGGTGGCTGGATGAATACAAGTTTGATGGATTTCGATTTGATGGTGTTACATCAATGATGTACACACATCATGGATTGGAGgtaattgaa----ttttgtgtttggtctttaagtttcttggtattttaagataacttggctacctttttcttagttaagtgttcaaggattactggattgccaa--------------------------
||| ||||| |||||||| |||||||| || ||||||||||||||||||||| ||||||||||||| || ||||||||||| || ||||||||| | |||| || || || | | | | ||| | ||| || | | | | || | | || | || | || ||| |
TCTCCTTTCAAATGCACGGTGGTGGCTAGAAGAATACAAGTTTGATGGATTTAGATTTGATGGTGTAACCTCAATGATGTATACTCATCATGGACTCTCGgtacttcaaacttttctacaatggatggctaatgcaatctttatgtttttcccatctttccaatgttgtatcagctttaagtatatcttaggtcggtctgctgaccttctattttgtgggttttggatag
upper sequence: GLYMA19G37750.2 (Glycine max), 5'ss of exon 13
lower sequence: AT2G36390.1 (Arabidopsis thaliana), 5'ss of exon 13
TCTACTTTCGAATGCACGATGGTGGCTGGATGAATACAAGTTTGATGGATTTCGATTTGATGGTGTTACATCAATGATGTACACACATCATGGATTGGAGgtaattgaattttgtgtttggtctttaagtttcttggtattttaagataacttggctacctttttcttagttaagtgttcaaggattactggattg---ccaa-------------------
||| ||||| || || ||||||||||||| ||||||||||||||||| || ||||||||||||| || || ||||||||||| ||||||||| || |||| | ||||| ||| ||| || || | ||| | | || | | || | | || || || || ||| || || | | ||
TCTTCTTTCCAACGCGAGATGGTGGCTGGAAGAATACAAGTTTGATGGGTTCAGATTTGATGGTGTGACTTCCATGATGTACACTCATCATGGACTGCAGgtggt---atttt-tgtatggaattagttttgttctttatgtcactatttgatag-tatcctacaaatatgcaaatgcaaaaagatggctttatggaacctaactgctagcgtttgtggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15662309|gb|BI699680.1|BI699680EST: CACACATCATGGATTGGAG GTAGCATTTACTGGAAATTACAATGAGTATTTTGGTTTTGCAACTGATGTT
genomic: CACACATCATGGATTGGAGgtaattgaat ... ctcgctgcagGTAGCATTTACTGGAAATTACAATGAGTATTTTGGTTTTGCAACTGATGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTACTTTCGAATGCACGATGGTGGCTGGATGAATACAAGTTTGATGGATTTCGATTTGATGGTGTTACATCAATGATGTACACACATCATGGATTGGAGgtaattgaattttgtgtttggtctttaagtttcttggtattttaagataacttggctacctttttcttagttaagtgttcaaggattactggattgccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG