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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCTCAATTGCCTGAGGGCATAACTGAATTATGGCATCATGACAAATTGTCTGTGCCCTTGgtatgtattcagaagttcattaacgaaaattgtttccttgtatgtcattcaccagaaattcactttcacattaaggagaaactgggaaaaattttctacttttatttgttgtgaccaactcctaataatataatgaaaacgttgaagcaagactggctttaactgtttgagattattactgttttttggcag

Basic information

species Glycine max
transcript GLYMA19G36860.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36860.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv08s0007g04980.t01 (Vitis vinifera), 5'ss of exon 13
ATGGCTCAATTGCCTGAGGGCATAACTGAATTATGGCATCATGACAAATTGTCTGTGCCCTTGgtatgtattcagaagttcattaacgaaaattgtttccttgtatgtcattcaccagaaattcactttcacattaaggagaa-actgggaaaaattttctacttttatttgttgtgaccaactcctaataatataatgaaaacgttgaagcaagactggctttaactgtttgagattattactgttttttggcag
|||||||||||||||||||| || |||||||||  ||||||||| ||  |||||||||| ||||||||| || ||||| |     |   ||  | ||   || | ||           |  ||| |||   | ||  | |  | |||| |  |     |  | |                                                                                            
ATGGCTCAATTGCCTGAGGGTATTACTGAATTACTGCATCATGAAAAGCTGTCTGTGCCTTTGgtatgtgtt-agaagctgccacatataaccttttcaattttttggtgaatttgttaggttcccttgagctttctgcaacatactgaggcagcaactgcaat--------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7283359|gb|AW595968.1|AW595968
EST:     CTGAGGGCATAACTGAATTATGGCATCATGACAAATTGTCTGTGCCCTTG                         ATCAAGTGTGAAAATGTAATAATTCTTAGTGCAACAAATGTTCCAGAGCTG
genomic: CTGAGGGCATAACTGAATTATGGCATCATGACAAATTGTCTGTGCCCTTGgtatgtattc ... tttttggcagATCAAGTGTGAAAATGTAATAATTCTTAGTGCAACAAATGTTCCAGAGCTG
EST: gi|6667659|gb|AW279110.1|AW279110
EST:     CTGAGGGCATAACTGAATTATGGCATCATGACAAATTGTCTGTGCCCTTG                         ATCAAGTGTGAAAATGTAATAATTCTTAGTGCAACAAATGTTCCAGAGCTG
genomic: CTGAGGGCATAACTGAATTATGGCATCATGACAAATTGTCTGTGCCCTTGgtatgtattc ... tttttggcagATCAAGTGTGAAAATGTAATAATTCTTAGTGCAACAAATGTTCCAGAGCTG