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CTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCTTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAGgtttgccataaaaaaatttaatgtactttgtttcagttttatgaagttatttttgcctttaaccgtataaagtttttcatttatattcttctctgatgcag
species | Glycine max |
transcript | GLYMA19G30460.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ATTGGACTAGAAAAGAACAG TGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGAEST: gi|208154130|gb|GD956163.1|GD956163
genomic: ATTGGACTAGAAAAGAACAGgtttgccata ... tctgatgcagTGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGA
EST: TTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAG TGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTEST: gi|193452263|gb|FK418529.1|FK418529
genomic: TTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAGgtttgccata ... tctgatgcagTGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCT
EST: TTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAG-ACAG TGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGAEST: gi|193354959|gb|FK322568.1|FK322568
genomic: TTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAGgtttgccata ... tctgatgcagTGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGA
EST: TTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAG TGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGAEST: gi|193511194|gb|FK468463.1|FK468463
genomic: TTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAGgtttgccata ... tctgatgcagTGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGA
EST: TGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAAGAAAAGAACAG TGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGAEST: gi|193651300|gb|FK597677.1|FK597677
genomic: TGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACT-AGAAAAGAACAGgtttgccata ... tctgatgcagTGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGA
EST: GAAAAGAACAG TGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGAEST: gi|208058249|gb|GD860254.1|GD860254
genomic: GAAAAGAACAGgtttgccata ... tctgatgcagTGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGA
EST: TTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGA-CAG TGATATTGTGGAGATEST: gi|208112736|gb|GD909731.1|GD909731
genomic: TTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAGgtttgccata ... tctgatgcagTGATATTGTGGAGAT
EST: TTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAG TGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGAEST: gi|193583057|gb|FK539685.1|FK539685
genomic: TTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAGgtttgccata ... tctgatgcagTGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGA
EST: TTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAG TGATATTGTGGAGATGGTTTCTTATGCACCEST: gi|208288352|gb|GE084365.1|GE084365
genomic: TTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAGgtttgccata ... tctgatgcagTGATATTGTGGAGATGGTTTCTTATGCACC
EST: TTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAG TGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGAEST: gi|193557764|gb|FK515731.1|FK515731
genomic: TTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAGgtttgccata ... tctgatgcagTGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGA
EST: GAAAAGAACAG TGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGAEST: gi|6724799|gb|AW309198.1|AW309198
genomic: GAAAAGAACAGgtttgccata ... tctgatgcagTGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGA
EST: TTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAG TGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGA
genomic: TTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAGgtttgccata ... tctgatgcagTGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCTTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAGgtttgccataaaaaaatttaatgtactttgtttcagttttatgaagttatttttgcctttaaccgtataaagtttttcatttatattcttctctgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC