Sequence
atgc intronic sequence ATGC exonic sequenceTGTGAACTTGCTTACATCAACAATTAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCTACAAAGAACTACACTTTGCAGgttatttaatgtgttttttggatttttttttaattcatacaaggatggtgattaaagctttatagtttcattccttaattatgcttgtcagtgcag
Basic information
species | Glycine max |
transcript | GLYMA18G51810.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 5'ss of exon 13
TGTGAACTTGCTTACATCAACAATTAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCTACAAAGAACTACACTTTGCAGgt-----tattta------atgtgttttttggatttttttttaat----tcatacaaggatggtgattaa--agctttatagtttcattc--cttaat--tatgcttgtcagtgcag----
||||||||||| |||||||| ||||||| |||||||||||||| ||| || |||| |||||| | || ||||| || ||||| ||||||||||||||||| |||||| || |||| | ||||| ||| || | ||| | | || | |||| |||| | | | |||| |||| || | |
CGTGAACTTGCTAACATCAACCATTAAAGCTGATGCTGACCAATCGGATCTGCGGTTCTGCTTCAGAATAATTTCTCCCACAAAAAACTACACTTTGCAGgtacaaatatttaccagaaatctgttgcatctattttatttagatagatttatattacaggaatttttgaatagctgccagatttcttccttcctaatgacatgcacctctatttgggcag
upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G059225_T02 (Zea mays), 5'ss of exon 13
TGTGAACTTGCTTACATCAACAATTAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCTACAAAGAACTACACTTTGCAGgtta-----tttaatgtgttttttggatttttttttaattcatacaaggatggtgattaaagctttatagttt-cattccttaattatgcttgtcagtgcag------------------------
||| |||||||| ||||| || |||||||| ||||| |||||||||||| || |||| |||||| | || ||||| || |||||||||||||| |||||||| || |||| | | ||| | | ||| | | | | |||| | | ||||| | | | ||| | | ||| | || || ||
TGTAAACTTGCTAACATCGACCATTAAAGTTGATGCAGACCAATCAGATCTGCGGTTCTGCTTCAGAATAATTTCTCCCACAAAGAACTACACGTTGCAGgtatgaagcttaaatgcatatgttgatatctgtttctttatacaggatgatgttatatgaagctgttcaatagacatacttgtgatattgatttctgtctagtgatgtgcattggaaattgtgcag
upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM5G872204_T02 (Zea mays), 5'ss of exon 13
TGTGAACTTGCTTACATCAACAATTAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCTACAAAGAACTACACTTTGCAGgttatttaatgtgttttttggatttttttttaattcatacaaggatggtgattaaagctttatagtttcattccttaattatgcttgtcagtgcag
||| || ||| | ||||| || |||||||| |||||||| ||||||||||||||||| || ||| | || |||||||| ||||||| |||||| |||||||| || | |||| | | | | | || | | | | || || ||| || || || |||| |
TGTAAATTTGTTGACATCGACCATTAAAGTTGATGCTGAGCAATCAGATTTGAGGTTCTGTTTCAGAATTATTTCACCCACAAAGATCTACACATTGCAGgt-atagcacaagtttatggtctgtcatattgaatatgatcaagacttccat----acttcatgaacatatctgctatttatacag----------
upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 13
lower sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 13
TGTGAACTTGCTTACATCAACAATTAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCTACAAAGAACTACACTTTGCAGgtt--atttaatgtgttttttggatttttttttaattcatacaaggatggtgattaaagctttatagttt-----cattccttaattatgcttgtcagtgcag
|||||||| || || |||||||||||||| || ||||| ||||||||| ||||||||||||| ||||||| ||||||||||| |||||||| ||||||||| ||| | |||||| || || || | | ||| | ||| || ||||||| || | ||| ||||| ||||||||||||
AGTGAACTTACTCACCTCAACAATTAAAGTCGACGCTGATCAATCAGATCTGAGGTTTTGCTTTAGGATCATATCACCTACAAAAAACTACACGTTGCAGgtttgattcagagtgtttgttactgccttaaaactttattgtatacatgtttgcccaagtttaatagttttcactcagtgtttacttatgtttgtcagtgcag
upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 13
TGTGAACTTGCTTACATCAACAATTAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCTACAAAGAACTACACTTTGCAGgtta--tttaatgtgttttttggatttttt---tttaattca-tacaaggatggtgattaaagctttata--gtttcattccttaattatgcttgtcagtgcag------------------------------------------------------------------------------------
|||||| || | ||||||||||| || || |||||||| || |||||| | |||||||| ||| |||| ||||| || || |||||||| ||||||||||| | ||| | | ||| | | | || | || | | | || | || | | | | | || | || ||| || | || | | | |
AGTGAACCTGTTGACATCAACAATAAAGGTTGATGCTGATCAGTCAGATCTCAGGTTTTGTTTCAGGATTATTTCTCCAACGAAGAACTATACTTTGCAGgtaaatcttacagcttaggttgcactcatgaagttcagtttacttctttgaaattatttgatacctgaaactgtatttttgcttgatggttctgtgaaatactgatggaatggtgaattgttaagtgttattattgatttttttctcactagtgctcattaatgttgtacatttgcttgtcagcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21637852|gb|BM108007.1|BM108007EST: TGAGGTTTTGCTTCCGGATCATTTCACCTACAAAGAACTACACTTTGCAG --ANAG--TGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTT
genomic: TGAGGTTTTGCTTCCGGATCATTTCACCTACAAAGAACTACACTTTGCAGgttatttaat ... gtcagtgcagGCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTGAACTTGCTTACATCAACAATTAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCTACAAAGAACTACACTTTGCAGgttatttaatgtgttttttggatttttttttaattcatacaaggatggtgattaaagctttatagtttcattccttaattatgcttgtcagtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC