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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATCTACTTGGGGCTGATAAACCGTTTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAGGTCTTTTTTCAggtaaagtacacaattgcacacatgttaaaatattgtttacaatcactgactgctacatgctaaaccgttctttctaaatttgttagcttctcactggtatttatcatcttgtgccttgca

Basic information

species Glycine max
transcript GLYMA18G43310.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8826413|gb|BE210143.1|BE210143
EST:     TTTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAGGTCTTTTTTCA                         GTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA
genomic: TTTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAGGTCTTTTTTCAggtaaagtac ... gtgccttgcaGTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA
EST: gi|15203846|gb|BI426614.1|BI426614
EST:     TTTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAGGTCTTTTTTCA                         GTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA
genomic: TTTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAGGTCTTTTTTCAggtaaagtac ... gtgccttgcaGTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA
EST: gi|16276277|gb|BI941773.1|BI941773
EST:     TTTTATGCGTTAGCTNTACTTGGCCTAATAATTCCACAGGTCTTTTTTCA                         GTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA
genomic: TTTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAGGTCTTTTTTCAggtaaagtac ... gtgccttgcaGTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA