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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATATATGAAAAGTTGCCAAATGATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGtttgtcatttttttttgttttgaagttgcaagtctgtgtagcctaattgccgttacagagtacctcacataataataataagagtggatttgaaagaaattgatatttggttttgctggttttcatttgaattaaccttggaacattttcatccttagg

Basic information

species Glycine max
transcript GLYMA18G08180.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 13
lower sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 13
-TAATATATGAAAAGTTGCCAAATGATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGt-------ttgtcatttttttttgttttgaagttgcaagtctgtgtagcctaattgccgttacagagtacctcacataataataataagagtggatttgaaagaaattgatatttggttttgctggttttcatttgaattaaccttggaacattttcatccttagg
 |  | ||||| || ||||||||||||||||| || ||||||||  || ||||||| ||||| || || ||||||         ||| || ||  |   |||  | |   ||   | | |  | || ||  | || | |     | ||  |  ||   |    |    | |||||     | |  |    |   |  |   | |  |  |                              
CTTGTTTATGAGAAATTGCCAAATGATATCTCAGAGAGGCATGTCCTATTGTTGGATCCTATTCTCGGGACAGgtaattaacccgtctttcttcatcactttttactgaaaacattttatttcatatttctctttgctgtaatacacatttgttagccaattcaacacacttgaagtgcctagtgacactgaaattatacatcttgtcag------------------------------

upper sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 13
-TAATATATGAAAAGTTGCCAAATGATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGtttgtcatttttttttgttttgaagttgcaagtctgtgtagcctaattgccgttacagagtacctcacataataataataagagtggatttgaaagaaattgatatttggttttgctggttttcatttgaattaaccttggaacattttcatccttagg
 |||| ||||||||  | ||||| |||||||| || |||||||||||||| ||||| ||| | || |||||||||||||  | || |  || | | ||  |   | | |    | |  | |    |||  |   |   ||   ||      || |   |   |    |||||  || |                                                       
CTAATCTATGAAAAACTTCCAAAAGATATCTCAGACAGGCATGTGTTACTCTTGGATCCTGTCCTAGGCACAGgtttgt-gtgttctcatgatgtaaaaatattatttttgtcaacacagtaagggttttaatttttttcttttat-----atgaacatacttacagaagaatatgttg------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21602644|gb|BQ612975.1|BQ612975
EST:     GATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGG                         GAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
genomic: GATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGtttgtcattt ... catccttaggGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
EST: gi|6951844|gb|AW423912.1|AW423912
EST:     CTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGG                         GAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
genomic: CTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGtttgtcattt ... catccttaggGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
EST: gi|58019197|gb|CX705939.1|CX705939
EST:     GATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGG                         GAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGTGTGTACCTGA
genomic: GATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGtttgtcattt ... catccttaggGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
EST: gi|15286158|gb|BI470049.1|BI470049
EST:     GATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGG                         GAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
genomic: GATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGtttgtcattt ... catccttaggGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
EST: gi|58018989|gb|CX705731.1|CX705731
EST:     GATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGG                         GAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGTGTGTACCTGA
genomic: GATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGtttgtcattt ... catccttaggGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
EST: gi|9984937|gb|BE659045.1|BE659045
EST:     CTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGG                         GAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
genomic: CTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGtttgtcattt ... catccttaggGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA