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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTAATATACTCTAAGCAGgtagaggcttgtttatttatgtatcaaataatactgatttttgttcatcagattgttttgtgcttctcttgttaaattctttaatattgttatgacctat...

Basic information

species Glycine max
transcript GLYMA18G02960.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 13
TGCTTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTAATATACTCTAAGCAGgtagaggcttgtttatttatgtatcaaataatactgatttttgttcatcagattgttttgtgcttctcttgttaaattctttaatattgttatgacctat-
|||| | ||||||||||| || || || || || || ||||||||||| ||||||||||| |||||||| ||||||||||| || ||||| || |||||||||      | ||| || | ||||  |  ||| || |||||      | |||  |||  |   |  | |       |    |||||   ||      |   
TGCTCTGAAAATATACATAAAGGCTAGGGCAACCCCTAAAGTTGTTGCCGCTTTTGCTGAAAGAAGGGAATTTGACAAGATCCTTATATATTCAAAGCAGgta------tatttgttca-gtattgatgaatcctcattttcagctgtaaga--gttcagctttgatgtaaactgttggcctaatacatttgctgtttcag

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 13
TGCTTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTAATATACTCTAAGCAGgtagaggcttgtttatttatgtatcaaataatactgatttttgttcatcagattgttttgtgcttctcttgttaaattctttaatattgttatgacctat-
|||| | ||||||||||| || || || || || || ||||||||||| ||||||||||| |||||||| ||||||||||| || ||||| || |||||||||      | ||| || | |||   |  ||| || |||||      | |||  |||  |   |  | |       |    |||||   ||      |   
TGCTCTGAAAATATACATAAAGGCTAGGGCAACCCCTAAAGTTGTTGCCGCTTTTGCTGAAAGAAGGGAATTTGACAAGATCCTTATATATTCAAAGCAGgta------tatttgttca-gtactgatgaatcctcattttcagctgtaaga--gttcagctttgatgtaaactgttggcctaatacatttgctgtttcag

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 11
TGCTTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTAATATACTCTAAGCAGgtagaggcttgtttatttatgtatcaaataatactgatttttgttcatcagattgttttgtgcttctcttgttaaattctttaatattgttatgacctat
|||  | |||||||||||||| ||||| || || || ||||||||||||||||||||||| || |||||||||||||| || || ||||| || |||||||||  |  |  |||  ||||||       | | ||  |||||  | || |  |    |||  ||| | || |  |                         
TGCACTGAAAATATACATCAAGGCCAGGGCAACCCCTAAAGTTGTTGCTGCTTTTGCTGAAAGGAGGGAGTTTGACAAAATACTTATATATTCAAAGCAGgtat-gtttgctttggttatgtg----gaagtcct--tttttagttat-acctgaccttgaacttttgttttccag------------------------

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 2
TGCTTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTAATATACTCTAAGCAGgtagaggcttgtttatttatgtatcaaataatactgatttttgttcatcagattgttttgtgcttctcttgttaaattctttaatattgttatgacctat----------
|||  | ||||||||||| || || || || || || ||||||||||||||||||||||| || ||||||||||||||||  || |||||||| ||||||||      || |||  || | |      | || ||| |||  |||  |   | |  |||| ||||| | | |||  ||||  ||  | |||      |            
TGCACTGAAAATATACATAAAGGCTAGGGCAACCCCTAAAGTTGTTGCTGCTTTTGCTGAAAGGAGGGAGTTTGACAAGACACTGATATACTCAAAGCAGgttcg---ttatttggttttat------tgattctgttttcagttgttgtaactcatttgagcttcacattttat-ttctacaacttggttccaggttgggtacactcca

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 7
TGCTTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTAATATACTCTAAGCAGgtagaggcttgtttatttatgtatcaaataatactgatttttgttcatcagattgttttgtgcttctcttgttaaattctttaatattgttatgacctat
                            |  || || |||||||||||||| |||||||| || ||||||||||||||||| || |||||||| ||||||||      || |||  || | |      | || ||| |||  |||  |   | |  |||| |||||   | |||  ||||  ||  | | |         
----------------------------GGCACCCCTAAAGTTGTTGCTGCATTTGCTGAAAGGAGGGAGTTTGACAAGATACTGATATACTCAAAGCAGgttcg---ttatttggttttat------tgattctgttttcagttgttgtaactcatttgagcttcaaattttat-ttctacaacttgggtccag-----

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 13
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 13
TGCTTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTAATATACTCTAAGCAGgtagaggcttgtttatttatgtat-caaataatactgatttttgttcatcagattgttttgtgcttctcttgttaaattctttaatattgttatgacctat
|||| ||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||| |||||||||||||||| ||  | || || || ||||||||| |   ||   | || | || | |         || | | | | |   | |     |||||||      ||   ||| ||| || |||| |    ||| 
TGCTCTAAAAATATACATCAAAGCTAGAGCTACTCCAAAAGTCGTTGCAGCTTTTGCAGAGCGAAGGGAGTTTGACAAAATATTGATTTATTCAAAGCAGgtaaacaattaagttttaaagtttgccccctccgttgttatgtttaccctaaaggtcattgtgctcaagaggtaccattgttttatgttgtgac--tctag

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 13
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 13
TGCTTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTAATATACTCTAAGCAGgtagaggcttgtttatttatgtatcaaataatactgatttttgttcatcagattgttttgtgcttctcttgttaa-attctttaatattgttatgacctat
 ||| | |||||||||||||||||  | || |||||||||||||| || |||||||| || ||||||||||||||||| || || || ||||| |||||||||     |     || |||     ||    | ||  | ||| | |   | | | | |  ||  ||     |||  ||| ||| ||||||| |   |    
CGCTCTGAAAATATACATCAAAGCTCGGGCGACTCCAAAAGTTGTAGCAGCTTTTGCAGAAAGAAGGGAGTTTGACAAAATACTGATTTACTCAAAGCAGgtaagcaataag--atctatagtataacctcttctattatttttaccctaaagt-tctgttgtctcatgaattaccattgtttcatattgtgacttcag--

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 13
TGCTTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTAATATACTCTAAGCAGgtaga-ggcttg--------tttatttatgtatcaaataa--tactgatttttgttcatcagattgt----tttgtgcttctcttgttaaattctttaatatt-gttatgacctat-------------------------------------------------
|||  | |||||||| || ||||| ||||| ||||| ||||||||||| || ||||||||| |  ||||||||||||| ||||| |||||||| ||||||||  |  || ||        |||  ||   | | ||| ||  ||    ||||| ||| |     |||    |||||   |    |||||     |||  |||  || ||    |||                                                 
TGCACTCAAAATATATATTAAAGCGAGAGCAACTCCGAAAGTTGTTGCAGCCTTTGCTGAGCGTCGGGAGTTTGACAAAATTCTGATATACTCAAAGCAGgtgaatagcatgatctaggttttcgttgcctcttaaacaaaatatatgttttttttctttttcctgtaaaatttgtttcttatctgttactactttttttatcagtaatattttattattgaattatgggcatttagagtaactgtgttttcttcgtcgctgtag

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S452_30V6.1 (Physcomitrella patens), 5'ss of exon 14
TGCTTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTAATATACTCTAAGCAGgtagaggcttgtttatttatgtatcaaataatactgatttttgttcatcagattgttttgtgcttctcttgttaaattctttaatattgttatgacctat------------------------------------------------------------------
 ||||| ||||| ||||| || ||||| ||||| || || || ||||| |||||||||||| |  | |||||||| |||||||| || ||||| ||||||||  || | || | |   |  |||   ||    ||     |  ||||  |  |  |||  | | | |    ||  |||      ||||   ||  ||| |                                                                  
GGCTTTGAAAATTTACATAAAGGCCAGGGCTACACCCAAGGTGGTTGCAGCTTTTGCTGAGCGGCGAGAGTTTGATAAGATTCTGATTTACTCCAAGCAGgtt-agtcatgctca---aaatatttgatggctcttggcct--ttcacaacgtgctttgtttcctttggcattgcatttcagggtatt-caattgcctttcttctttgtgcgggggagcaaacctacacacgtgtattgtttgacgcagtttttcctacactgtag