1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGAAAGCTGGGCAGAAGGATATCTTTTACATAACTGGAACCAGCAAAGAACAACTGGAAAACTCTCCATTCCTTGAGCGGCTTAAGAAGAAAAATTTTGAggtgcaatttaaattgtttgatttttattatttgctctattattttgttctctaaaaacattagcctttctattctgctgaggggtgatgatttaatgtcttctaagcgtattttcttttcaatttcctaca
species | Glycine max |
transcript | GLYMA17G37820.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CAACTGGAAAACTCTTCATTCCTTGAGCGGCTTAAGAAGAAAAATNTTGA GGTTATTTTCTTCACGGATCCAGTTGATGAATACTTGATGCAATACCTGATEST: gi|4297522|gb|AI442630.1|AI442630
genomic: CAACTGGAAAACTCTCCATTCCTTGAGCGGCTTAAGAAGAAAAATTTTGAggtgcaattt ... atttcctacaGGTTATTTTCTTCACGGATCCAGTTGATGAATACTTGATGCAATACCTGAT
EST: CAACTGGAAAACTCTCCATTCCTTGAGCGGCTTAAGAAGAAAAATTTTGA GGTTATTTTCTTCACGGATCCAGTTGATGAATACTTGATGCAATACCTGATEST: gi|193523621|gb|FK478384.1|FK478384
genomic: CAACTGGAAAACTCTCCATTCCTTGAGCGGCTTAAGAAGAAAAATTTTGAggtgcaattt ... atttcctacaGGTTATTTTCTTCACGGATCCAGTTGATGAATACTTGATGCAATACCTGAT
EST: CAACTGGAAAACTCTCCATTCCTTGGGCGGCTTAAGAAGAAAAATTTTGA GGTTATTTTCTTCACGGATCCAGTTGATGAATACTTGATGCAATACCTGAT
genomic: CAACTGGAAAACTCTCCATTCCTTGAGCGGCTTAAGAAGAAAAATTTTGAggtgcaattt ... atttcctacaGGTTATTTTCTTCACGGATCCAGTTGATGAATACTTGATGCAATACCTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAAGCTGGGCAGAAGGATATCTTTTACATAACTGGAACCAGCAAAGAACAACTGGAAAACTCTCCATTCCTTGAGCGGCTTAAGAAGAAAAATTTTGAggtgcaatttaaattgtttgatttttattatttgctctattattttgttctctaaaaacattagcctttctattctgctgaggggtgatgatttaatgtcttctaagcgtattttcttttcaatttcctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA