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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAAGTGTTATGCAGAGTTTGTTTCGAGGGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAGgtgagatcaaatatgtgatggtcaatgggacaacttcatgcattacattatagtttggccttatgcttttttatttatcaatttttttcttggtcaaaatagctttggtcttatgcttgatttccatgtactgcag

Basic information

species Glycine max
transcript GLYMA17G13040.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51341177|gb|CO982494.1|CO982494
EST:     GGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAG                         CACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
genomic: GGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAGgtgagatcaa ... tgtactgcagCACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
EST: gi|11413717|gb|BF425728.1|BF425728
EST:     GGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAG                         CACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
genomic: GGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAGgtgagatcaa ... tgtactgcagCACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
EST: gi|4296915|gb|AI442543.1|AI442543
EST:     GGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAG                         CACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
genomic: GGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAGgtgagatcaa ... tgtactgcagCACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
EST: gi|19346249|gb|BM891129.1|BM891129
EST:     GGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAG                         CACTTGCTCAGAGAAGTGTAA
genomic: GGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAGgtgagatcaa ... tgtactgcagCACTTGCTCAGAGAAGTGTAA
EST: gi|21255778|gb|BQ452666.1|BQ452666
EST:     AACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAG                         CACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
genomic: AACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAGgtgagatcaa ... tgtactgcagCACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
EST: gi|13479627|gb|BG508970.1|BG508970
EST:     GGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAG                         CACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
genomic: GGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAGgtgagatcaa ... tgtactgcagCACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
EST: gi|13478885|gb|BG508228.1|BG508228
EST:     ATCGTGTTCTTTGCAG                         CACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
genomic: ATCGTGTTCTTTGCAGgtgagatcaa ... tgtactgcagCACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
EST: gi|8403908|gb|BE059542.1|BE059542
EST:     GGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAG                         CACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
genomic: GGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAGgtgagatcaa ... tgtactgcagCACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
EST: gi|13791494|gb|BG654085.1|BG654085
EST:     GGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAG                         CACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
genomic: GGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAGgtgagatcaa ... tgtactgcagCACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
EST: gi|21601041|gb|BQ611372.1|BQ611372
EST:     GGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAG                         CACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC
genomic: GGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAGgtgagatcaa ... tgtactgcagCACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGC