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TGGTGCTATTAAACCAACAGCTGTCTATGTTCCTCTCGAAGAAATTATGAAGGATAAGAATTTTGAGCTTGTAACAAAAGAAATATTTGGACCATTTCAGgtatggaaagggacactgagaacatgaaaataaagtttttatatgcccttttaaaaaaaaaattcttttttttagtaaaaaataataataattctactctattctttttgtgagataaatatttatgtttccag
species | Glycine max |
transcript | GLYMA17G10610.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AGGATAAGAATTTTGAGCTTGTAACAAAAGAAATATTTGGACCATTTCAG GTTATCACGGACTATCAAAACAGTCAGCTAGCAGTTGTATTGGATGCTCTGEST: gi|193390857|gb|FK355993.1|FK355993
genomic: AGGATAAGAATTTTGAGCTTGTAACAAAAGAAATATTTGGACCATTTCAGgtatggaaag ... atgtttccagGTTATCACGGACTATCAAAACAGTCAGCTAGCAGTTGTATTGGATGCTTTG
EST: GATAAGAATTTTGAGCTTGTAACAAAAGAAATATTTGGACCAATTTCTAG GTTATCACGGACTATCAAAACAGTCAGCTAGCAGTTGTATTGGATGCTTTEST: gi|193559424|gb|FK510835.1|FK510835
genomic: GATAAGAATTTTGAGCTTGTAACAAAAGAAATATTTGGACCA-TTTC-AGgtatggaaag ... atgtttccagGTTATCACGGACTATCAAAACAGTCAGCTAGCAGTTGTATTGGATGCTTT
EST: AGGATAAGAATTTTGAGCTTGTAACAAAAGAAATATTTGGACCATTTCAG GTTATCACGGACTATCAAAACAGTCAGCTAGCAGTTGTATTGGATGCTTTGEST: gi|193385198|gb|FK352002.1|FK352002
genomic: AGGATAAGAATTTTGAGCTTGTAACAAAAGAAATATTTGGACCATTTCAGgtatggaaag ... atgtttccagGTTATCACGGACTATCAAAACAGTCAGCTAGCAGTTGTATTGGATGCTTTG
EST: AGGATAAGAATTTTGAGCTTGTAACAAAAGAAATATTTGGACCATTTCAG GTTATCACGGACTATCAAAACAGTCAGACTAGCAGTTGTA
genomic: AGGATAAGAATTTTGAGCTTGTAACAAAAGAAATATTTGGACCATTTCAGgtatggaaag ... atgtttccagGTTATCACGGACTATCAAAACAGTCAG-CTAGCAGTTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGCTATTAAACCAACAGCTGTCTATGTTCCTCTCGAAGAAATTATGAAGGATAAGAATTTTGAGCTTGTAACAAAAGAAATATTTGGACCATTTCAGgtatggaaagggacactgagaacatgaaaataaagtttttatatgcccttttaaaaaaaaaattcttttttttagtaaaaaataataataattctactctattctttttgtgagataaatatttatgtttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA