1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AGATGCTCAAAAAGAAGCAGAAGTTACTTCAGAGGCTACTGAGAGGGAACTTGAGCTTGAAGCTCAACTTGTCGAAGCAAGGAGCATCATACAGGAGCAGgtaatgttttttgttcatgcagttgaaatcacaagttaggtccaaggcatttagagcctgtttgatacttttattgtgatgtaaaatcaacaaaagctgc...
species | Glycine max |
transcript | GLYMA17G07040.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TGAGCTTGAAGCTCAACTTGTCGAAGCAAGGAGCATCTATACAGGAGCAG GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGEST: gi|209709785|gb|BW674001.1|BW674001
genomic: TGAGCTTGAAGCTCAACTTGTCGAAGCAAGGAGCATC-ATACAGGAGCAGgtaatgtttt ... tgtattacagGCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG
EST: TTGAGCTTGAAGCTCAACTTGTCGAAGCAAGGAGCATCATACAGGAGCAG GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG
genomic: TTGAGCTTGAAGCTCAACTTGTCGAAGCAAGGAGCATCATACAGGAGCAGgtaatgtttt ... tgtattacagGCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGCTCAAAAAGAAGCAGAAGTTACTTCAGAGGCTACTGAGAGGGAACTTGAGCTTGAAGCTCAACTTGTCGAAGCAAGGAGCATCATACAGGAGCAGgtaatgttttttgttcatgcagttgaaatcacaagttaggtccaaggcatttagagcctgtttgatacttttattgtgatgtaaaatcaacaaaagctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG