Sequence
atgc intronic sequence ATGC exonic sequenceATCATTGGTGGAGCTTATTAGTCAAAAGGAGGTTGTAGGGGATCTCTTTAATCAACTTCGGCTGGCTCTGCAGAGGCGAAGTAAAGACCGTCCTGCTCAAgtaagtttcagtcatataatcccattgtgtattccatttttatgctttattgcggtaatggcaataccttttaccattgttggaaaattaaaagcattag...
Basic information
species | Glycine max |
transcript | GLYMA17G04580.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G04580.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os01g14810.3 (Oryza sativa), 5'ss of exon 13
ATCATTGGTGGAGCTTATTAGTCAAAAGGAGGTTGTAGGGGATCTCTTTAATCAACTTCGGCTGGCTCTGCAGAGGCGAAGTAAAGACCGTCCTGCTCAAgtaagtttcagtcatataatcccattgtgtattccatttttatgctttattgcggtaatggcaataccttttaccattgttggaaaattaa---aagcattag--
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ACAGCTTATCACACTTATACAACAAAAGGAAGTCGTGGGAGATCTTTTTAACCAGCTTCGGCTGGCTCTGCAGAGACGAACAAATTCACGCCCAGCACAGgta--ttaatgtcttaaattggaacaatgaagct--tttgttagctttaacatg-tctcaattttctctcttgagaaacatgagattctgccctatacattatgt
upper sequence: GLYMA17G04580.1 (Glycine max), 5'ss of exon 13
lower sequence: AT5G48960.1 (Arabidopsis thaliana), 5'ss of exon 13
ATCATTGGTGGAGCTTATTAGTCAAAAGGAGGTTGTAGGGGATCTCTTTAATCAACTTCGGCTGGCTCTGCAGAGGCGAAGTAAAGACCGTCCTGCTCAAgtaagtttcagtcat-ataatccc---attgtgtattccatttttatgctttat------tgcggtaatggcaataccttttaccattgttg--gaaaatt------aaaagcattag------------------
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AGAGCTAATAGAGCTTATAAATCAAAAAGAGGTTGTTGGGGATCTCTTTAACCAACTTCGGCTTGCTCTTCAAAGACGAAGCAAAGGCCGTCCTGCTCAGgtttgtttatctccttacaagctctagagtctatcttctctccctgtgtggaacacaatgtgtatgaacagataaatagatagagatttgtgacggaaattgcttataaagatatccgtttctcttttccttctag
upper sequence: GLYMA17G04580.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv05s0020g00880.t01 (Vitis vinifera), 5'ss of exon 13
ATCATTGGTGGAGCTTATTAGTCAAAAGGAGGTTGTAGGGGATCTCTTTAATCAACTTCGGCTGGCTCTGCAGAGGCGAAGTAAAGACCGTCCTGCTCAAgtaagtttcagtcatata-atcccattgtgtattccattttta--tgctttatt-gcggtaatggcaataccttttaccattgttggaaaattaaaagcattag
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CACACTGATAGACCTTATAAATCAGAAGGAAGTTGTAGGAGATCTATTTAACCAACTTCGACTTGCTTTGCAAAGGCGAACCAAGGGGCGGCCTGCTCAAgtaagttttattgggttgtatcacattgtttttgttgggtccagtcacacagttcactcttatgacgtttcattttgctcccacttcaga--tagtcatctt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298169844|gb|HO018468.1|HO018468EST: ATCAACTTCGGCTGGCTCTGCAGAGGCGAAGTAAAGACCGTCCTGCTCAA ACCCTAGCAGCAACTAATCTGGATGATGAAGACCTCACTGATAGCATGCAA
genomic: ATCAACTTCGGCTGGCTCTGCAGAGGCGAAGTAAAGACCGTCCTGCTCAAgtaagtttca ... tcttaaaaagACCCTAGCAGCAACTAATCTGGATGATGAAGACCTCACTGATAGCATGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCATTGGTGGAGCTTATTAGTCAAAAGGAGGTTGTAGGGGATCTCTTTAATCAACTTCGGCTGGCTCTGCAGAGGCGAAGTAAAGACCGTCCTGCTCAAgtaagtttcagtcatataatcccattgtgtattccatttttatgctttattgcggtaatggcaataccttttaccattgttggaaaattaaaagcattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaaa