1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AATTTGTGCATCACTGCGGCTTATCGACCTGTTAGAGAGCTAATACAGCAGGAGAGAATGAAGGACATGgtagttgttaaacaacttctactattttaagtttaacatctatgtccatgcaaactttggtatgagcttaactaaatatctattgcacgatatattag
species | Glycine max |
transcript | GLYMA16G29040.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTTATCGACCTGTTAGAGAGCTAATACAGCAGGAGAGAATGAAGGACATG GAAAAGAAGAAAAGAGAAGCAGAAGGCCAAAGTTCTGAAGATGCTTCAAACEST: gi|58015489|gb|CX702231.1|CX702231
genomic: CTTATCGACCTGTTAGAGAGCTAATACAGCAGGAGAGAATGAAGGACATGgtagttgtta ... gatatattagGAAAAGAAGAAAAGAGAAGCAGAAGGCCAAAGTTCTGAAGATGCTTCAAAC
EST: TAATACAGCAGGAGAGAATGAAGGACATG GAAAAGAAGAAAAGAGAAGCAGAAGGCCAAAGTTCTGAAGATGCTTCAAACEST: gi|51343790|gb|CO984523.1|CO984523
genomic: TAATACAGCAGGAGAGAATGAAGGACATGgtagttgtta ... gatatattagGAAAAGAAGAAAAGAGAAGCAGAAGGCCAAAGTTCTGAAGATGCTTCAAAC
EST: GAATGAAGGACATG GAAAAGAAGAAAAGAGAAGCAGAAGGCCAAAGTTCTGAAGATGCTTCTNNNEST: gi|51343794|gb|CO984527.1|CO984527
genomic: GAATGAAGGACATGgtagttgtta ... gatatattagGAAAAGAAGAAAAGAGAAGCAGAAGGCCAAAGTTCTGAAGATGCTTCAAAC
EST: CTTATCGACCTGTTAGAGAGCTAATACAGCAGGAGAGAATGAAGGACATG GAAAAGAAGAAAAGAGAAGCAGAAGGCCAAAGTTCTGAAGATGCTTCAAAC
genomic: CTTATCGACCTGTTAGAGAGCTAATACAGCAGGAGAGAATGAAGGACATGgtagttgtta ... gatatattagGAAAAGAAGAAAAGAGAAGCAGAAGGCCAAAGTTCTGAAGATGCTTCAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTGTGCATCACTGCGGCTTATCGACCTGTTAGAGAGCTAATACAGCAGGAGAGAATGAAGGACATGgtagttgttaaacaacttctactattttaagtttaacatctatgtccatgcaaactttggtatgagcttaactaaatatctattgcacgatatattag
- - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - AGGAGA