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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACTGTATTTGGTGGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgcttttgcattataaaacttagcagtgattacttattttgaatatgttaacttatgatggtatatctccttcccaattttatctctcaccatttcgtttcttttctgtggttctgcag

Basic information

species Glycine max
transcript GLYMA16G27210.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193731540|gb|FK667466.1|FK667466
EST:     GCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|9820553|gb|BE556063.1|BE556063
EST:     AAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: AAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|207691204|gb|GD673212.1|GD673212
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|207691197|gb|GD673205.1|GD673205
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|21256789|gb|BQ453677.1|BQ453677
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|11412011|gb|BF424022.1|BF424022
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|15202278|gb|BI425317.1|BI425317
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|254323261|gb|GR840066.1|GR840066
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|14012095|gb|BG727026.1|BG727026
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|7589454|gb|AW705228.1|AW705228
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|57575684|gb|CX548659.1|CX548659
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA