1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTCATAGCAACTGGAATTTCCACATGGTTGGTGGACAAAAGTGGCCGGAGGCTGCTTCTAATAgtgagtatgaagcaaaattcattcatttgtaaccattttctaatatctattatactaaagatggttatgaagttcaataaaatttgagatctgttatcacttctgcag
species | Glycine max |
transcript | GLYMA16G25310.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GAATTTCCACATGGTTGGTGGACAAAAGTGGCCGGAGGCTGCTTCTAATA ATATCCTCATCTGTAATGACAGTTAGCCTTCTCATTGTTTCTATAGCATTTEST: gi|16280886|gb|BI944198.1|BI944198
genomic: GAATTTCCACATGGTTGGTGGACAAAAGTGGCCGGAGGCTGCTTCTAATAgtgagtatga ... acttctgcagATATCCTCATCTGTAATGACAGTTAGCCTTCTCATTGTTTCTATAGCATTT
EST: GGCCGGAGGCTGCTTCTAATA ATATCCTCATCTGTAATGACAGTTAGCCTTCTCATTGTTTCTATAGCATTTEST: gi|22523104|gb|BU081915.1|BU081915
genomic: GGCCGGAGGCTGCTTCTAATAgtgagtatga ... acttctgcagATATCCTCATCTGTAATGACAGTTAGCCTTCTCATTGTTTCTATAGCATTT
EST: GAATTTCCACATGGTTGGTGGACAAAAGTGGCCGGAGGCTGCTTCTAATA ATATCCTCATCTGTAATGACAGTTAGCCTTCTCATTGTTTCTATAGCATTTEST: gi|192319001|gb|FK009053.1|FK009053
genomic: GAATTTCCACATGGTTGGTGGACAAAAGTGGCCGGAGGCTGCTTCTAATAgtgagtatga ... acttctgcagATATCCTCATCTGTAATGACAGTTAGCCTTCTCATTGTTTCTATAGCATTT
EST: GGACAAAAGTGGCCGGAGGCTGCTTCTAATA ATATCCTCATCTGTAATGACAGTTAGCCTTCTCATTGTTTCTATAGCATTTEST: gi|192319000|gb|FK009052.1|FK009052
genomic: GGACAAAAGTGGCCGGAGGCTGCTTCTAATAgtgagtatga ... acttctgcagATATCCTCATCTGTAATGACAGTTAGCCTTCTCATTGTTTCTATAGCATTT
EST: GGACAAAAGTGGCCGGAGGCTGCTTCTAATA ATATCCTCATCTGTAATGACAGTTAGCCTTCTCATTGTTTCTATAGCATTT
genomic: GGACAAAAGTGGCCGGAGGCTGCTTCTAATAgtgagtatga ... acttctgcagATATCCTCATCTGTAATGACAGTTAGCCTTCTCATTGTTTCTATAGCATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCATAGCAACTGGAATTTCCACATGGTTGGTGGACAAAAGTGGCCGGAGGCTGCTTCTAATAgtgagtatgaagcaaaattcattcatttgtaaccattttctaatatctattatactaaagatggttatgaagttcaataaaatttgagatctgttatcacttctgcag
- - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT