1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGAGGAAGACTCTGACAAGTGGCAGCAACTGTCACAGGCTGCTTTTGAGAAATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATGgttggtctcacatcatttgtcaagctctaaacacattatgaaaaattctctaaaagattagaaattgttctcttgtagtttacttacctatattagcatc...
species | Glycine max |
transcript | GLYMA16G23870.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATG CATACATGCTTGAGAGGCTCCGTTGATCCTTTGEST: gi|207815878|gb|GD788763.1|GD788763
genomic: AATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATGgttggtctca ... ggcttttcagCATACATGCTTGAGAGGCTCCGTTGATCCTTTG
EST: CCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATG CATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATTEST: gi|22931966|gb|BU549105.1|BU549105
genomic: CCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATGgttggtctca ... ggcttttcagCATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATT
EST: AATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATG CATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATTEST: gi|207717904|gb|GD697376.1|GD697376
genomic: AATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATGgttggtctca ... ggcttttcagCATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATT
EST: AATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATG CATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATTEST: gi|16348882|gb|BI974477.1|BI974477
genomic: AATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATGgttggtctca ... ggcttttcagCATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATT
EST: AATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATG CATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATTEST: gi|193527749|gb|FK485939.1|FK485939
genomic: AATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATGgttggtctca ... ggcttttcagCATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATT
EST: AATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATG CATACATGCTTGAGAGGCTCCGTTGATCCTTTGEST: gi|207725902|gb|GD701386.1|GD701386
genomic: AATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATGgttggtctca ... ggcttttcagCATACATGCTTGAGAGGCTCCGTTGATCCTTTG
EST: CCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATG CATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATTEST: gi|9204567|gb|BE330791.1|BE330791
genomic: CCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATGgttggtctca ... ggcttttcagCATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATT
EST: AATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATG CATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATTEST: gi|11274128|gb|BF324496.1|BF324496
genomic: AATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATGgttggtctca ... ggcttttcagCATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATT
EST: AATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATG CATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATTEST: gi|207782295|gb|GD753278.1|GD753278
genomic: AATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATGgttggtctca ... ggcttttcagCATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATT
EST: AGAACTTAGAATG CATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATTEST: gi|193630006|gb|FK573298.1|FK573298
genomic: AGAACTTAGAATGgttggtctca ... ggcttttcagCATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATT
EST: AGTTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATG CATACATGCTTGAGCGGCTCCGTTGATCCTTTGCTAGAGGAAGEST: gi|193490437|gb|FK453364.1|FK453364
genomic: AATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATGgttggtctca ... ggcttttcagCATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAG
EST: AGTTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATG CATACATGCTTGAGACGGCTCCGTTGATCCTTTGCTAGAGGAAG
genomic: AATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATGgttggtctca ... ggcttttcagCATACATGCTTGAGA-GGCTCCGTTGATCCTTTGCTAGAGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGAAGACTCTGACAAGTGGCAGCAACTGTCACAGGCTGCTTTTGAGAAATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATGgttggtctcacatcatttgtcaagctctaaacacattatgaaaaattctctaaaagattagaaattgttctcttgtagtttacttacctatattagcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC