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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCATCTAAAGGGCATTTTATAGATGGTTGCTATGCACACTGCCAAACTGGAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaactgacattattttctcctttctacagaatatgtgcatctttgtgcggctttaggattaagaaaaatatacttggacacccaaaatatactat...

Basic information

species Glycine max
transcript GLYMA16G17190.3
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019735|gb|CX706477.1|CX706477
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|151410996|gb|EV280811.1|EV280811
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|18733889|gb|BM527870.1|BM527870
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|208107570|gb|GD906085.1|GD906085
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTA
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTA
EST: gi|21676519|gb|BQ628870.1|BQ628870
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|151403161|gb|EV272971.1|EV272971
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|7234310|gb|AW569649.1|AW569649
EST:     AATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: AATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|8669044|gb|BE190146.1|BE190146
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|151403120|gb|EV272930.1|EV272930
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGCGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|58019984|gb|CX706726.1|CX706726
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|214005021|gb|DB985409.1|DB985409
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGAACGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|15663740|gb|BI701111.1|BI701111
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAATACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|58014637|gb|CX701379.1|CX701379
EST:     GAATACAAGAGACATGGTTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|31460697|gb|CD402725.1|CD402725
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|15814521|gb|BI786796.1|BI786796
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|58022806|gb|CX709547.1|CX709547
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|8825755|gb|BE209421.1|BE209421
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|6072077|gb|AW101396.1|AW101396
EST:     GAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|214009011|gb|DB987090.1|DB987090
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|23729995|gb|BU763106.1|BU763106
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTC
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTC
EST: gi|31467378|gb|CD409406.1|CD409406
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCATCTAAAGGGCATTTTATAGATGGTTGCTATGCACACTGCCAAACTGGAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaactgacattattttctcctttctacagaatatgtgcatctttgtgcggctttaggattaagaaaaatatacttggacacccaaaatatactat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG