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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGgtagtagaaaataatcatgatgggtctcatgaaaattagtacatattacattttagtttaatttatgttatctttttattttaattttttaggtttctgcaaagtatttattttttttctcttgcag

Basic information

species Glycine max
transcript GLYMA16G08460.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320400|gb|GR826849.1|GR826849
EST:     AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAG                         GGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
genomic: AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGgtagtagaaa ... tctcttgcagGGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
EST: gi|19348065|gb|BM892597.1|BM892597
EST:     AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAG                         GGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
genomic: AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGgtagtagaaa ... tctcttgcagGGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
EST: gi|19453158|gb|BM954568.1|BM954568
EST:     AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAG                         GGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
genomic: AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGgtagtagaaa ... tctcttgcagGGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
EST: gi|15203110|gb|BI425878.1|BI425878
EST:     AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAG                         GGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
genomic: AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGgtagtagaaa ... tctcttgcagGGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
EST: gi|14990386|gb|BI316059.1|BI316059
EST:     AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAG                         GGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
genomic: AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGgtagtagaaa ... tctcttgcagGGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
EST: gi|19053118|gb|BM731785.1|BM731785
EST:     AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAG                         GGTTTGATTGTTGGTTCAAGAAAG
genomic: AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGgtagtagaaa ... tctcttgcagGGTTTGATTGTTGGTTCAAGAAAG
EST: gi|6566798|gb|AW234430.1|AW234430
EST:     AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAG                         GGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
genomic: AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGgtagtagaaa ... tctcttgcagGGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
EST: gi|6341574|gb|AW164398.1|AW164398
EST:     AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAG                         GGTGTGATTTGT-GGTTGAAGAAAAGCTTCACTTCAACACTTCAAGC
genomic: AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGgtagtagaaa ... tctcttgcagGGTTTGATT-GTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGC
EST: gi|298199413|gb|HO042776.1|HO042776
EST:     AGACACCTATAGAGGAGACTCGAAAGAAGATATGGCTTGTAGACTCAAAG                         GGTTTGATTGTTGGTCCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
genomic: AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGgtagtagaaa ... tctcttgcagGGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
EST: gi|208341298|gb|GE138994.1|GE138994
EST:     ACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTACAAAAG                         GGTTTGATTGTTGGTTC
genomic: ACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACT-CAAA-Ggtagtagaaa ... tctcttgcagGGTTTGATTGTTGGTTC
EST: gi|19453207|gb|BM954617.1|BM954617
EST:     AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAG                         GGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
genomic: AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGgtagtagaaa ... tctcttgcagGGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
EST: gi|7326720|gb|AW620518.1|AW620518
EST:     AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAG                         GGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT
genomic: AGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGgtagtagaaa ... tctcttgcagGGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACACTTCAAGCAGCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGgtagtagaaaataatcatgatgggtctcatgaaaattagtacatattacattttagtttaatttatgttatctttttattttaattttttaggtttctgcaaagtatttattttttttctcttgcag

- - - - - - - AGAGGA
- - - - - - -  GAGGAG
- - - - - - - - AGGAGA
- - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - -  AAGAAG