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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGTGGCCTCTGCAGCAAATCTGTGGGCTCTAATCATGGATGCAGGAACAGGTTTTTCTTCACAAGTTTATGAGTTATCCCCGGCCTTCCTGCACAAGgtgggttttttcttccttgatttatataattcatcttttgttaaataaatacgtatgagttaaattaaataattgatgtcttggtgctgggctgctggcattttgatctctcag

Basic information

species Glycine max
transcript GLYMA16G04580.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04580.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os07g07560.2 (Oryza sativa), 5'ss of exon 13
CTGTGTGGCCTCTGCAGCAAATCTGTGGGCTCTAATCATGGATGCAGGAACAGGTTTTTCTTCACAAGTTTATGAGTTATCCCCGGCCTTCCTGCACAAGgtgggttttttcttccttgatttatataattcatcttttgttaaataaatacgtatgagttaaattaaataattgatgtcttggtgctgggctgctggcattttgatctctcag
 |||||||| ||| |||||||||| ||||| || || |||||||||||||| |||||   ||| |||||| ||||| | || || |  || ||||| |||||    |      |  |    |   ||||||  |  || | | | |   |   |  ||||     ||| |   || |    |  | |   |                       
TTGTGTGGCGTCTTCAGCAAATCTTTGGGCCCTCATAATGGATGCAGGAACTGGTTTCCTTTCTCAAGTTCATGAGCTCTCACCAGTTTTTCTGCATAAGgtaaagtacaatctgttgaggtgtgataattagtacttggattatttgtttgctgagagtc---ctaact--ctgtttcaattatacatag-----------------------

upper sequence: GLYMA16G04580.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 13
CTGTGTGGCCTCTGCAGCAAATCTGTGGGCTCTAATCATGGATGCAGGAACAGGTTTTTCTTCACAAGTTTATGAGTTATCCCCGGCCTTCCTGCACAAGgtgggttttttcttccttgatttatataattcatcttttgttaaataaatacgtatgagttaaattaaataattgatgtcttggtgctgggctgctggcattttgatctctcag
||||||||||||| || ||||||| ||||| || || |||||||| |||||||||| |  ||| || || |||||  ||||  | | ||||||||| |||||    ||||| ||| |   || || |   | ||||| |||  | |   | | |      ||  | | |  | |||  | |   |  |||  |      |              
CTGTGTGGCCTCTTCATCAAATCTTTGGGCCCTTATTATGGATGCGGGAACAGGTTATAGTTCCCAGGTCTATGAACTATCAGCTGTCTTCCTGCATAAGgtta--ttttttttcatgtgttgatttctattatcttctgt-gagtgggttcatgca---tacctgatactactgacctttcacttttggattttcactag-------------

upper sequence: GLYMA16G04580.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 5'ss of exon 12
CTGTGTGGCCTCTGCAGCAAATCTGTGGGCTCTAATCATGGATGCAGGAACAGGTTTTTCTTCACAAGTTTATGAGTTATCCCCGGCCTTCCTGCACAAGgtgggttttttcttccttgatttatataattcatcttttgttaaataaatacgtatgagttaaattaaataattgatgtcttggtgctgggc--tgctggcattttgatctctcag-------
| ||||||| |||    |||||||||||||||| || |||||||| || ||||| ||| || | |||||||||||| | || |  |  ||||| |||||||||||| | |  |  || | |  |         | ||  ||   |||   |  |    ||| ||| | | ||  | | ||   ||  || ||  |||   ||  ||||    |          
CAGTGTGGCTTCTTGTACAAATCTGTGGGCTCTTATTATGGATGCGGGGACAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAGgtgggtgtgtggtgtctcgctcaa--------gttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016025|gb|CX702767.1|CX702767
EST:     TCCTGCACAAG                         GACTGGATTATGGAGCAGTGGGAGAAAAATTACTATATCAGTTCAATAGCT
genomic: TCCTGCACAAGgtgggttttt ... gatctctcagGACTGGATTATGGAGCAGTGGGAGAAAAATTACTATATCAGTTCAATAGCT
EST: gi|15664402|gb|BI701773.1|BI701773
EST:     CAGGTTTTTCTTCACAAGTTTATGAGTTATCCCCGGCCTTCCTGCACAAG                         GACTGGATTATGGAGCAGTGGGAGAAAAATTACTATATCAGTTCAATAGCT
genomic: CAGGTTTTTCTTCACAAGTTTATGAGTTATCCCCGGCCTTCCTGCACAAGgtgggttttt ... gatctctcagGACTGGATTATGGAGCAGTGGGAGAAAAATTACTATATCAGTTCAATAGCT
EST: gi|207841925|gb|GD815881.1|GD815881
EST:     TCACAAGTTTATGAGTTATCCCCCGGCCTTCCTGCACAAG                         GACTGGATTATGGAGCAGTGGGAGAAAAAATTACTATATCAGTTCAATAGC
genomic: TCACAAGTTTATGAGTTAT-CCCCGGCCTTCCTGCACAAGgtgggttttt ... gatctctcagGACTGGATTATGGAGCAGTGGGAG-AAAAATTACTATATCAGTTCAATAGC
EST: gi|24135575|gb|BU926085.1|BU926085
EST:     CAGGTTTTTCTTCACAAGTTTATGAGTTATCCCCGGCCTTCCTGCACAAG                         GACTGGATTATGGAGCAGTGGGAGAAAAATTACTATATCAGTTCAATAGCT
genomic: CAGGTTTTTCTTCACAAGTTTATGAGTTATCCCCGGCCTTCCTGCACAAGgtgggttttt ... gatctctcagGACTGGATTATGGAGCAGTGGGAGAAAAATTACTATATCAGTTCAATAGCT
EST: gi|57574923|gb|CX547898.1|CX547898
EST:     AGGTTTTTCTTCACAAGTTTATGAG-TATTCCCCGGCCTTCCTGCACAAG                         GACTGGATTATGGAGCAGTGGGAGAAAAATTACTATATCAGTTCAATAGCT
genomic: AGGTTTTTCTTCACAAGTTTATGAGTTA-TCCCCGGCCTTCCTGCACAAGgtgggttttt ... gatctctcagGACTGGATTATGGAGCAGTGGGAGAAAAATTACTATATCAGTTCAATAGCT