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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTGATTGCTTGGGAACTTTGATAAAGACATTCAGGGCATCTTTCTTGCCTTTCTTTGATGATCTGTCCTCATACCTAACTCCTATGTTTgtaagtttctttttattccttttataattcctttaataatgtatcttcctttgctgctagaatgtgtctttagtttttttatgttcttgcttaaaagttg...

Basic information

species Glycine max
transcript GLYMA16G04400.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04400.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv08s0007g07240.t01 (Vitis vinifera), 5'ss of exon 13
GTTGGTGATTGCTTGGGAACTTTGATAAAGACATTCAGGGCATCTTTCTTGCCTTTCTTTGATGATCTGTCCTCATACCTAACTCCTATGTTTgtaagtttctttttattccttttataattcctttaataatgtatcttccttt--gctgctagaatg--tgtctttagtttttttatgttcttgcttaaaagttg
 | |||||||||||||| |||||||| || || |||| | | ||||||||||||||||||||||| || || || ||||| |  |||||||  ||||||||  |  |||     |  |  ||    |  | || | |  | ||||  | |  |||  |   | |||||| |   || ||| || |  ||        
ATCGGTGATTGCTTGGGCACTTTGATCAAAACCTTCAAGTCTTCTTTCTTGCCTTTCTTTGATGAGCTTTCATCTTACCTGATGCCTATGTGGgtaagtttaatagtatgttggtgtttgtttgccttttcatttgttgttcttttgggttttaggtttgctttctttaatgccttcatgctcctttttgttt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12690810|gb|BG157146.1|BG157146
EST:     CTTTCTTGCCTTTCTTTGATGATCTGTCCTCATACCTAACTCCTATGTTT                         GGTAAAGACAAAACCTCAGAGGAAAGGAGAATTGCCATTTGTATATTTGAT
genomic: CTTTCTTGCCTTTCTTTGATGATCTGTCCTCATACCTAACTCCTATGTTTgtaagtttct ... caataatcagGGTAAAGACAAAACCTCAGAGGAAAGGAGAATTGCCATTTGTATATTTGAT