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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACACTGGAGAGATACTGGGAGTTCATATATTTGGGTTGCATGCTGCTGATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttcctaccatagctgtcacatgtgagagactgggatttagttcgtaatggttgcatgtgctgcatttggtttatttttgtcgatagcaacaagaaactttttatccgtctatatggtaactcccaacattgttgtgctacaatgcag

Basic information

species Glycine max
transcript GLYMA15G15310.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15310.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os01g23610.1 (Oryza sativa), 5'ss of exon 13
TGACACTGGAGAGATACTGGGAGTTCATATATTTGGGTTGCATGCTGCTGATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttcctaccatagctgtcacatgtgagagactgggatttagttcgtaatggttgcatgtgctgcatttggtttatttttgtcgatagcaacaagaaactttttatccgtctatatggtaactcccaacattgttgtgctacaatgcag
|||||||||||| || || |||||||| ||||| || |||||||||||||| ||||||||||||||||| || || || ||  | ||||| ||| | || |||| |    | | |||   | |    | |||  |  | | ||||  |      || || |||   |                                                                                       
TGACACTGGAGAAATTCTTGGAGTTCACATATTAGGTTTGCATGCTGCTGACCTCATCCACGAGGCATCAAACGCCATTGCCCTCGGAACTCGTGTACAAgtaagtga--cgagcatt-ttattgtttatgaatggattgcatttgctcaacgctgtttacatcccccag------------------------------------------------------------------------------------

upper sequence: GLYMA15G15310.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 5'ss of exon 13
TGACACTGGAGAGATACTGGGAGTTCATATATTTGGGTTGCATGCTGCTGATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttcctaccatagctgtcacatgtgagagactgggatttagttcgtaatggttgcatgtgctgcatttggtttatttttgtcgatagcaacaagaaactttttatccgtctatatggtaactcccaacattgttgtgctacaatgcag
|||||||||||| || || || || || || || || ||||| |||||||| ||||||||||||||||| ||||| || ||  ||||||| ||  | || || | | |    |   ||  | ||     |  |    |     ||||    | |  |  | ||    || |||||   |  |     | |   |  ||                                                        
TGACACTGGAGAAATTCTTGGTGTGCACATTTTGGGTTTGCACGCTGCTGACCTCATCCACGAGGCATCAAATGCCATTGCCCTAGGAACTCGGTTGCAAgtgagtataatgatattatttttcttcacttggttcgtctttgttagcctttca--gcagtataacttgaatttgacatgatcactcccaccacg-cag-------------------------------------------------------

upper sequence: GLYMA15G15310.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G145595_T01 (Zea mays), 5'ss of exon 13
TGACACTGGAGAGATACTGGGAGTTCATATATTTGGGTTGCATGCTGCTGATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttcctaccatagctgtcacatgtgagagactgggatttagttcgtaatggttgcatg-tgctgcatttggtttatttttgtcgatagcaacaagaaactttttatccgtctatatggtaactcccaacattgttgtgctacaatgcag
|||||| ||||| || || ||||||||||| || || ||||||||||||||||||||||| |||||||| ||||| || ||  | ||||| | | | ||||| | |||  |   |||  |||| |  ||||    | |     |   ||  |  |   |||||  ||||  |    | |||  ||||   ||| |     | | | |                                                
TGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGCTTGCATGCTGCTGATCTCATCCATGAGGCATCAAATGCCATTGCCCTTGGAACCCATGTGCAGgtgagtttgtcatgcatt-ctgttagctgtgtagcattt---ctgcatttttgttctctgcataatgctaaac---gcttaaatttgcacataaccttttgtaccctgcag--------------------------------------------

upper sequence: GLYMA15G15310.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G073774_T01 (Zea mays), 5'ss of exon 13
TGACACTGGAGAGATACTGGGAGTTCATATATTTGGGTTGCATGCTGCTGATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttcctaccatagctgtcacatgtgagagactgggatttagttcgtaatggttgcatgtgctgcatttggtttatttttgtcgatagcaacaagaaactttttatccgtctatatggtaactcccaacattgttgtgctacaatgcag
|||||| || || || || || ||||| || || || |||||||||||||||||||| ||||||||||| ||||| || ||  ||||||| ||| | || || | | |  ||   | | || |    | |     | |    ||| ||| |     ||   |   |  ||     ||| || ||   |     |   |   ||   ||| |   | |  |                                  
TGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTTTGCATGCTGCTGATCTCATTCACGAGGCATCAAATGCCATCGCCCTAGGAACTCGTGTGCAAgtgagtgtcgctgata-atctattttttattgagcattcatcttt-gttggattctgtcatactcgtagctagcagttcatcttgaac-----ctgtacataatcgtttctgtatttgcag---------------------------------

upper sequence: GLYMA15G15310.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G152958_T02 (Zea mays), 5'ss of exon 13
--------------TGACACTGGAGAGATACTGGGAGTTCATATATTTGGGTTGCATGCTGCTGATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttcctaccatagctgtcacatgtgagagactgggatttagttcgtaatggttgcatgtgctgcatttggtttatttttgtcgatagcaacaagaaactttttatccgtctatatggtaactcccaacattgttgtgctacaatgcag
              |||||| || || || || || ||||| || || || |||||||||||||||||||| ||||||||||| ||||| || ||  ||||||| ||| | || || | | |  ||   | | || |    | |     | |    ||| ||| |     ||   |   |  ||     ||| || ||   |     |   |   ||   ||| |   | |  |                                  
TTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTTTGCATGCTGCTGATCTCATTCACGAGGCATCAAatgccatcgccctaggaactcgtgtgcaagtgagtgtcgctgata-atctattttttattgagcattcatcttt-gttggattctgtcatactcgtagctagcagttcatcttgaac-----ctgtacataatcgtttctgtatttgcag---------------------------------

upper sequence: GLYMA15G15310.1 (Glycine max), 5'ss of exon 13
lower sequence: AT3G16950.1 (Arabidopsis thaliana), 5'ss of exon 13
TGACACTGGAGAGATACTGGGAGTTCATATATTTGGGTTGCATGCTGCTGATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttcctaccatagctgtcacatgtgag---agactg-ggatttagttcgtaatggttgcatgtgctgcatttggtttatttttgtcgat--------agcaacaagaaactttttatccgtctatatggtaactcccaacattgtt--gtgcta-caatgcag
||||| ||| || ||  | |||||||||||||||||  ||||||| ||||| || ||||| || || || ||||| || ||  ||||||| ||||||||||||   |||| |    |||   | ||   |||    ||   |  |  || | |  | ||  |  | |     | | |    | || |   | | |        | | || | |  | || | |   ||| | |  | |  |||  |||  ||   || || |  |||||
TGACAATGGTGAAATCTTAGGAGTTCATATATTTGGACTGCATGCAGCTGACCTTATCCATGAAGCTTCTAATGCGATTGCTCTAGGAACGCGTATTCAGgtaggatttcattgattagtgattactattgaatctagctcgtagcctttgatattgataatatcctacagcgaaatcaagtcatatacatagttcctgctgaaactactaaacgcattatttgtatctgtttcttgatcccctgcatgttttaatggtatctctgcag

upper sequence: GLYMA15G15310.1 (Glycine max), 5'ss of exon 13
lower sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 13
TGACACTGGAGAGATACTGGGAGTTCATATATTTGGGTTGCATGCTGCTGATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttcctacca-tagctgtcacatgtgagagactgggatttagttcgtaatggttgcatgtgctgcatttggtttatttttgtcgatagcaacaagaaactttttatccgtctatatggtaactcccaacattgttgtgctacaatgcag
||||| ||| || || || ||||||||||||||||| ||||||||||||||||| ||||| || ||||| || || || || ||||||||||||||||||||     | |  || |    || ||   | |     |  ||  ||||| | || |   ||   ||||         || | | | ||  ||||    ||                                                        
TGACAATGGTGAAATCCTTGGAGTTCATATATTTGGATTGCATGCTGCTGATCTTATCCATGAAGCATCAAACGCGATTGCTTTAGGAACACGTATTCAGgtctggctgcaaactaacctctctccggtattgatcataggactttagattgtgagctttttttgtgt--------gtctttgtgtgatgataaatgcag-------------------------------------------------------

upper sequence: GLYMA15G15310.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ16882 (Selaginella moellendorffii), 5'ss of exon 13
TGACACTGGAGAGATACTGGGAGTTCATATATTTGGGTTGCATGCTGCTGATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttcctaccatagctgtcacatgtgagagactgggatttagttcgta-atggttgcat-gtgctgcatttggtttatttttgtcgatagcaacaagaaactttttatccgtctatatggtaactcccaacattgttgtgctacaatgcag
 || || || || ||  |||||||||| ||| |||| || || || |||||||||||||||||||| ||||| || || || || |||||  |  | |||||   ||    |   |||  |  | ||      | |||    ||   ||| || ||||||| || || | |                                                                                     
AGATACCGGGGAAATCTTGGGAGTTCACATAATTGGCTTACACGCAGCTGATCTCATCCACGAGGCTTCCAACGCCATGGCTTTGGGAACTAGAGTCCAGgt---ttgctatgtgataattccctcac-----acactc---ttcttttcttacatggttgaatcgtccag-------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5509415|gb|AI855973.1|AI855973
EST:     ATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAG                         GATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGAT
genomic: ATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttc ... tacaatgcagGATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGAT
EST: gi|193675594|gb|FK614792.1|FK614792
EST:     ATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAG                         GATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGAT
genomic: ATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttc ... tacaatgcagGATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGAT
EST: gi|19054208|gb|BM732875.1|BM732875
EST:     ATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAG                         GATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGAT
genomic: ATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttc ... tacaatgcagGATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGAT
EST: gi|20814410|gb|BQ298888.1|BQ298888
EST:     ATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAG                         GATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGAT
genomic: ATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttc ... tacaatgcagGATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGAT