Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCCAATTTATGTGCTCCGGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACCTCACTGATGGATGTGGAGAGGAGGCATGgtacacactttcatctttgagaccttatgctttaccccattgactattttctttattagtgttcatgcaatactctatagtgttgctgatgtattttgat...
Basic information
species | Glycine max |
transcript | GLYMA15G11890.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G11890.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 13
GTTGCCAATTTATGTGCTCCGGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACCTCACTGATGGATGTGGAGAGGAGGCATGgta------cacactttcatctttgagaccttatgctttacc--ccat---tgactattttctttattagtgttcatgcaatactctatagtgttgctgatgtattttgat
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GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttctacagttccgttgtttgcacttggagattagctagctatgtttcattaaatttcttttgaccgtttattcaaatacctactatgtgattaa-----------
upper sequence: GLYMA15G11890.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G143862_T01 (Zea mays), 5'ss of exon 6
GTTGCCAATTTATGTGCTCCGGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACCTCACTGATGGATGTGGAGAGGAGGCATGgtacacactttcat---ctttgagaccttatgct--ttaccccattgactattttctttattagtgttcatgcaatactctatagtgttgctgatgtattttgat
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GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttcttgcttcactttgttaccaactgatggctactctactatgctctagcagcattcttctttacactttattcaagta-gcaaccaatgtgtga----
upper sequence: GLYMA15G11890.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G059151_T01 (Zea mays), 5'ss of exon 13
GTTGCCAATTTATGTGCTCCGGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACCTCACTGATGGATGTGGAGAGGAGGCATGgta-----cacacttt-catctttgagaccttatg----ctttaccccat--tgactattttctttattagtgttcatgcaat-actctatag--tgttgctgatgtattttgat---------------------------------------------------------------------------
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GTTGGCAACCTTGCGGCTCCAGTTGAAGAATGGACTGTTGGTGGAACAGCATTAACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttcttgcttcacctcgtttccaactgatggctactctactatgttctagttacattcttc-tcgatgttcattcaaccaatgtgtgacatgccattcttgttccttttttcggttgattagcatttatactttggttataatttgtgccggagtgtaacttttgacgttgttctctgcaatcag
upper sequence: GLYMA15G11890.1 (Glycine max), 5'ss of exon 13
lower sequence: AT1G12000.1 (Arabidopsis thaliana), 5'ss of exon 13
GTTGCCAATTTATGTGCTCCGGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACCTCACTGATGGATGTGGAGAGGAGGCATGgtacacactttcatctttgagaccttatgctttaccccattgactattttctttattagtgttcatgcaatactctatagtgttgctgatgtattttgat
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GTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGCTCTCACAGCCTTGATGGATGTCGAGAGGAGACACGgtacagaaatataaatcaataaagct-tactaagacacattttgaaatctagatattaaaaaatcagagttgatttcaac--ttgcag------------
upper sequence: GLYMA15G11890.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv10s0116g00360.t01 (Vitis vinifera), 5'ss of exon 13
GTTGCCAATTTATGTGCTCCGGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACCTCACTGATGGATGTGGAGAGGAGGCATGgtacacactttcatctttgagaccttatgctttaccccattgactattttctttattagtgttcatgcaatactctatagtgttg-ctgatgtattttgat
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GTTGGGAATCTGTCTGCTCCAGTTGAAGAATGGACTGTTGGTGGAACTGCCTTGACTTCATTAATGGATGTGGAGAGGAGACATGgtatgatagcctctctttttcccatctcactttgcagatgtgattcctattatggaaaacttcttttctcctttggaggctatagtctggcactttatac-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21602004|gb|BQ612335.1|BQ612335EST: TGTTGGTGGAACTGCACTCACCTCACTGATGGATGTGGAGAGGAGGCATG GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAACTTGAAG
genomic: TGTTGGTGGAACTGCACTCACCTCACTGATGGATGTGGAGAGGAGGCATGgtacacactt ... ttctttgcagGTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAACTTGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCCAATTTATGTGCTCCGGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACCTCACTGATGGATGTGGAGAGGAGGCATGgtacacactttcatctttgagaccttatgctttaccccattgactattttctttattagtgttcatgcaatactctatagtgttgctgatgtattttgat
- - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG