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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTTTCAAGATATCAAGGACTCTACTGGTATAGAGGGCAAGGAATTGAGAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgtaatcatttggagaattaccagtttataatttttgttaattactatggtttcttttaattttctaatgttgattccctttgttgaacatgcaacag

Basic information

species Glycine max
transcript GLYMA15G10030.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os03g57290.1 (Oryza sativa), 5'ss of exon 13
AAGCTTTCAAGATATCAAGGACTCTACTGGTATAGAGGGCAAGGAATTGAGAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgtaatcatttggagaattaccagtttataatttttgttaattactatggtttcttttaattttctaatgttgattccctttgttgaacatgcaacag
|||||| |  ||||||||||| || |||||||| ||||  || |||||| |||| || ||||||||||||||||| || |||||||| || || |||||||||||  | |     ||     |||  | |  |   ||||||   ||    || || |   || | | ||| || | |                           
AAGCTTCCTCGATATCAAGGAATCGACTGGTATTGAGGATAAAGAATTGCGAAGAACGCTGCAATCACTTGCATGCGGTAAAGTTCGGGTTCTCCAAAAGgtgtggctctttattttatccaaatgtctaact---aattttcagtagcagct-tgttcagttgtcacttt-tattttcag------------------------

upper sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 13
lower sequence: AC177936.6_FGT008 (Zea mays), 5'ss of exon 1
AAGCTTTCAAGATATCAAGGACTCTACTGGTATAGAGGGCAAGGAATTGAGAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtg--------tttgtaatcatttggagaattaccagtttataatttttgttaattactatggtttcttttaattttctaatgttgattccctttgttgaacatgcaacag
|||||| |  || ||||| || || |||||||| ||||  || ||||||||| |||| |||||||| ||||||||||| |||||||| || || |||||||||||        ||||| |||||     | |||  |||| |  |  || | ||||||   ||   |  ||| |                                       
AAGCTTCCTTGACATCAAAGATTCCACTGGTATCGAGGATAAAGAATTGAGACGGACACTGCAATCGCTTGCATGTGGTAAAGTTCGGGTTCTCCAAAAGgtgtgatcctttttttgtcatcatcatttgcattttcagtatgcagcttct-ttaattgtaatctatgttttcag--------------------------------------

upper sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 13
lower sequence: AC155496.2_FGT009 (Zea mays), 5'ss of exon 13
AAGCTTTCAAGATATCAAGGACTCTACTGGTATAGAGGGCAAGGAATTGAGAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgtaatcatttggagaattaccagtttataatttttgttaattactatggtttcttttaattttctaatgttgattccctttgttgaacatgcaacag
||||||    || ||||| || || |||||||| ||||  || ||||||||| | ||  ||||||| ||||||||||| |||||||| || || |||||||||||||  |  |  ||||    ||   || |||  | |||  ||       |   | |||||| |   || |||  ||  ||  |                   
AAGCTTCATTGACATCAAAGATTCCACTGGTATCGAGGATAAAGAATTGAGACGAACATTGCAATCTCTTGCATGTGGTAAAGTTCGGGTTCTCCAAAAGgtgtgttcctttttttttgccccatcgtcattttgcattttcagta------tgcagcttctttaa---ttgtaacctttgttttcag-----------------

upper sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 13
AAGCTTTCAAGATATCAAGGACTCTACTGGTATAGAGGGCAAGGAATTGAGAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtg--------tgtttgtaatcatttggagaattaccagtttata-atttttgttaattactatggtttcttttaatt------ttctaatgttgattccctttgttgaacatgcaacag----------
 |||||||||||||| |||||||||||||| || ||||  ||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||        ||   | |||  | ||   | ||     | |||| || ||| | | || |         |   ||||       | | |  ||| || | | | |  || ||   | |           
TAGCTTTCAAGATATTAAGGACTCTACTGGCATTGAGGATAAGGAGTTGAGAAGGACTCTGCAGTCCCTTGCATGTGGAAAAGTTCGTGTCCTTCAAAAGgtgaggggttatggcaggaattgtgtgttcattttgatatatatatatatttatcactttcagatagaattacaaattggtgagcttttaccttgttttcttgtctgcaaaatattatatttgtttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19934696|gb|BQ079726.1|BQ079726
EST:     GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAG                         TTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAA
genomic: GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgt ... catgcaacagTTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAA
EST: gi|17400275|gb|BM177057.1|BM177057
EST:     GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAG                         TTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAA
genomic: GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgt ... catgcaacagTTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAA
EST: gi|7028742|gb|AW458525.1|AW458525
EST:     GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAG                         TTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATT
genomic: GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgt ... catgcaacagTTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATT
EST: gi|151395410|gb|EV265287.1|EV265287
EST:     GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAG                         TTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAA
genomic: GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgt ... catgcaacagTTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAA
EST: gi|151404598|gb|EV274412.1|EV274412
EST:     GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAG                         TTGCCAAAGGGTAGAGATGTGGGGGGATGATGACTCATTTGTTTTTAATGA
genomic: GAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGgtgtgtttgt ... catgcaacagTTGCCAAAGGGTAGAGATGTGGAGG-ATGATGACTCATTTGTTTTTAATGA