Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTTCCCACCCAAATTTTATTGGTGGAAGCAAGGCATTAGAAATAGCTGCACAGCAGACCAAGTCGTCTAGGGTTGCTATACCAGTTTCTAGGCAAAAGgtatacttgttataagatctaattccaaatatgccccatatttttcatttgagatatgtattctaatttatgttggccttttttttctttcaaaattttcgtattaatcctatag

Basic information

species Glycine max
transcript GLYMA15G06380.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G129155_T01 (Zea mays), 5'ss of exon 13
---CACTTCCCACCCAAATTTTATTGGTGGAAGCAAGGCATTAGAAATAGCTGCACAGCAGACCAAGTCGTCTAGGGTTGCTATACCAGTTTCTAGGCAAAAGgtatacttgttataagatctaattccaaatatgccccatatttttcatttgagatatgtattctaatttatgttggccttttttttctttcaaaattttcgtattaatcctatag
   ||| || |||||||||||||||||||| ||||||||  | ||   |||    |||||    | |||  | |   |  |   | | ||    ||   ||||||||   ||||||         ||  ||  |    |  |||           |  ||| ||   |  | ||| | || |  || ||    |    ||   | || | |       
AAACACGTCACACCCAAATTTTATTGGTGGCAGCAAGGCTGTTGAGCAAGCACAGCAGCAAGTTAGGTCTGCCAAAATGTCAGCAGCGGTGGTAAG---AAAGgtatgaatgttattgtcaaccgttataataacaatctgtat----------ggtaatggatgtgacctgatggtagcatagttgttaaggcgtccttaaagcatcactta-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269238|gb|BM885494.1|BM885494
EST:     CAGTTTCTAGGCAAAAG                         GATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAAAGAAGTGTGAAGTCT
genomic: CAGTTTCTAGGCAAAAGgtatacttgt ... aatcctatagGATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAAAGAAGTGTGAAGTCT
EST: gi|193351152|gb|FK316728.1|FK316728
EST:     CGCAACAGACCAAGTCCTCTAGGGTTGCTATACCAGTTTCTAGGCAAAAG                         GATGCTCTGGAATCTGATAAGGGATCTGCCTCTGA
genomic: CACAGCAGACCAAGTCGTCTAGGGTTGCTATACCAGTTTCTAGGCAAAAGgtatacttgt ... aatcctatagGATGCTCTGGAATCTGATAAGGGATCTGCCTCTGA
EST: gi|193525627|gb|FK478458.1|FK478458
EST:     TGCTATACCAGTTTCTAGGCAAAAG                         GATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAAAGAAGTGTGAAGTCT
genomic: TGCTATACCAGTTTCTAGGCAAAAGgtatacttgt ... aatcctatagGATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAAAGAAGTGTGAAGTCT
EST: gi|208142641|gb|GD943997.1|GD943997
EST:     CACAGCAGACCAAGTCGTCTAGGGTTGCTATACCAGTTTCTAGGCAAAAG                         GATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAAAGAAGTGTGAAG
genomic: CACAGCAGACCAAGTCGTCTAGGGTTGCTATACCAGTTTCTAGGCAAAAGgtatacttgt ... aatcctatagGATGCTCTGGAATCTGATAAGGGATCTGCCTCTGAAAGAAGTGTGAAG